Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014793.1

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Forward (+)

2417 .. 3433

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggataagacctcatcttcttcttctactgaaaactccactggtgccactagggatcagtacctgaaacacctcaacaagctttcccacaagatctccaagcccacaatccgaaaacccaatttcgacccgcctcctcctcctcctcctccgcctcccgctccgattcccaacccccaaaaccaaaacgcaccgcttcagctccaatcctctgcttcgcagcctcagcagccgcccaatcagcaccagcctccggtctacaacatcaacaagaacgatttcagggacgtggttcagaagcttaccggttcgccggcccacacgccggaccggttcgcgactcctccgccgattcacccgcccaaaacccagagctccaggctccagcgcatccgacctccgccgctggcccagctcgccgcccggccgccttctcttctcgacggcgccgtttcggctcagccgaacaacaccaacaacaacaaccctctcattccgcccatgggaaccgccgcggctcatttcggcggcgtgatcggacggtccacggcgccgctgtctcctctgcctccttttccgaccgtccacgcggcggcggagtcgccggtctcggcctacatgaggttcctccacaactcgctctccgccggcgattctaatcagaacatgaaccagaagcagcagcatttctctggattttctcccttggctccactcgtctcacctcgctggaccaacctgacgccaccgcaaccggagcagaatcagaatcagaatcagaggcagcagcttcctcagccggagcaggctatggctccctcgtcggagcccccacaacctccacagtttgcttcctcccagccccaattcgctatgccaccgtcgccgcttccattcggatgcttgaattcgcctcggtcgcagtataatctgctttcgccgagtcagttagggtttcctcagctccctctgtcgccgactgtgccggttccaagccctaggtggaggggtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

338

Amino Acids

36.68

Weight (kDa)

10.35

Isoelectric Point (pI)

84.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	44, 446, 550
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	3 cut(s)	338, 515, 590
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	3 cut(s)	447, 551, 743
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	5 cut(s)	253, 325, 503, 592, 621
AgeI	ACCGGT	2 cut(s)	305, 330
AgsI	TTSAA	1 cut(s)	907
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	7 cut(s)	82, 202, 301, 375, 415, 790, 964
AluI	AGCT	7 cut(s)	82, 202, 301, 375, 415, 790, 964
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	3 cut(s)	564, 613, 724
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	4 cut(s)	315, 408, 425, 612
ApeKI	GCWGC	6 cut(s)	220, 229, 679, 682, 784, 787
ApoI	RAATTY	1 cut(s)	907
AsiGI	ACCGGT	2 cut(s)	305, 330
Asp700I	GAANNNNTTC	1 cut(s)	278
AspA2I	CCTAGG	1 cut(s)	998
AspLEI	GCGC	3 cut(s)	390, 449, 553
AspS9I	GGNCC	5 cut(s)	316, 328, 409, 543, 732
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	347, 714
AvaII	GGWCC	3 cut(s)	328, 543, 732
AvrII	CCTAGG	1 cut(s)	998
BanI	GGYRCC	3 cut(s)	44, 446, 550
BanII	GRGCYC	2 cut(s)	377, 831
Bbv12I	GWGCWC	1 cut(s)	377
BbvCI	CCTCAGC	3 cut(s)	225, 795, 960
BbvI	GCAGC	6 cut(s)	232, 241, 691, 694, 796, 799
BceAI	ACGGC	3 cut(s)	434, 460, 564
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	564, 613, 724
BfaI	CTAG	2 cut(s)	51, 999
BfoI	RGCGCY	2 cut(s)	450, 554
BglI	GCCNNNNNGGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	93
BlnI	CCTAGG	1 cut(s)	998
BlpI	GCTNAGC	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	379, 424
Bme18I	GGWCC	3 cut(s)	328, 543, 732
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	5 cut(s)	316, 328, 409, 543, 732
BmrFI	CCNGG	2 cut(s)	379, 424
BmsI	GCATC	2 cut(s)	399, 890
BpmI	CTGGAG	2 cut(s)	361, 368
Bpu10I	CCTNAGC	3 cut(s)	225, 795, 960
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	657
BsaHI	GRCGYC	3 cut(s)	447, 551, 743
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	6 cut(s)	501, 513, 546, 705, 914, 998
BsaWI	WCCGGW	4 cut(s)	253, 305, 330, 754
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 626, 656
Bsc4I	CCNNNNNNNGG	5 cut(s)	253, 325, 503, 592, 621
Bse118I	RCCGGY	6 cut(s)	305, 313, 330, 604, 647, 985
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	6 cut(s)	501, 513, 546, 705, 914, 998
BseGI	GGATG	2 cut(s)	390, 905
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	5 cut(s)	253, 325, 503, 592, 621
BseMII	CTCAG	4 cut(s)	239, 473, 809, 974
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	7 cut(s)	126, 129, 132, 135, 138, 333, 552
BseX3I	CGGCCG	1 cut(s)	425
BseXI	GCAGC	6 cut(s)	232, 241, 691, 694, 796, 799
BseYI	CCCAGC	2 cut(s)	411, 858
Bsh1236I	CGCG	3 cut(s)	338, 515, 590
Bsh1285I	CGRYCG	3 cut(s)	428, 582, 920
BshFI	GGCC	4 cut(s)	317, 410, 427, 614
BshNI	GGYRCC	3 cut(s)	44, 446, 550
BshTI	ACCGGT	2 cut(s)	305, 330
BsiEI	CGRYCG	3 cut(s)	428, 582, 920
BsiHKAI	GWGCWC	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	5 cut(s)	253, 325, 503, 592, 621
BsmAI	GTCTC	3 cut(s)	564, 613, 724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	317, 410, 427, 614
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	377, 831
Bsp143I	GATC	3 cut(s)	55, 93, 534
Bsp1720I	GCTNAGC	1 cut(s)	459
Bsp19I	CCATGG	1 cut(s)	501
Bsp68I	TCGCGA	1 cut(s)	338
BspANI	GGCC	4 cut(s)	317, 410, 427, 614
BspCNI	CTCAG	4 cut(s)	238, 472, 808, 973
BspFNI	CGCG	3 cut(s)	338, 515, 590
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	3 cut(s)	44, 446, 550
BspTNI	GGTCTC	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	161
BsrFI	RCCGGY	6 cut(s)	305, 313, 330, 604, 647, 985
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	6 cut(s)	305, 313, 330, 604, 647, 985
BssECI	CCNNGG	6 cut(s)	501, 513, 546, 705, 914, 998
BssMI	GATC	3 cut(s)	55, 93, 534
BssNI	GRCGYC	3 cut(s)	447, 551, 743
BssT1I	CCWWGG	3 cut(s)	501, 705, 998
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	5 cut(s)	543, 583, 846, 882, 982
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	3 cut(s)	447, 551, 743
BstC8I	GCNNGC	5 cut(s)	315, 408, 417, 649, 807
BstDEI	CTNAG	4 cut(s)	225, 459, 795, 960
BstDSI	CCRYGG	3 cut(s)	501, 513, 546
BstENI	CCTNNNNNAGG	1 cut(s)	619
BstF5I	GGATG	2 cut(s)	390, 905
BstFNI	CGCG	3 cut(s)	338, 515, 590
BstH2I	RGCGCY	2 cut(s)	450, 554
BstHHI	GCGC	3 cut(s)	390, 449, 553
BstKTI	GATC	3 cut(s)	58, 96, 537
BstMAI	GTCTC	3 cut(s)	564, 613, 724
BstMBI	GATC	3 cut(s)	55, 93, 534
BstMCI	CGRYCG	3 cut(s)	428, 582, 920
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	377, 422
BstUI	CGCG	3 cut(s)	338, 515, 590
BstV1I	GCAGC	6 cut(s)	232, 241, 691, 694, 796, 799
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	317, 410, 427, 614
BtgI	CCRYGG	3 cut(s)	501, 513, 546
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	390, 905
BtsIMutI	CAGTG	1 cut(s)	39
BtuMI	TCGCGA	1 cut(s)	338
Cac8I	GCNNGC	5 cut(s)	315, 408, 417, 649, 807
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	3 cut(s)	390, 449, 553
Cfr10I	RCCGGY	6 cut(s)	305, 313, 330, 604, 647, 985
Cfr13I	GGNCC	5 cut(s)	316, 328, 409, 543, 732
Cfr42I	CCGCGG	1 cut(s)	516
CpoI	CGGWCCG	1 cut(s)	328
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	2 cut(s)	305, 330
CspI	CGGWCCG	1 cut(s)	328
CviAII	CATG	3 cut(s)	502, 619, 667
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	225, 459, 795, 960
DinI	GGCGCC	2 cut(s)	448, 552
DpnI	GATC	3 cut(s)	57, 95, 536
DpnII	GATC	3 cut(s)	55, 93, 534
EaeI	YGGCCR	1 cut(s)	425
EagI	CGGCCG	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	6 cut(s)	141, 336, 390, 486, 611, 634
Ecl136II	GAGCTC	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	425
Eco130I	CCWWGG	3 cut(s)	501, 705, 998
Eco24I	GRGCYC	2 cut(s)	377, 831
Eco31I	GGTCTC	1 cut(s)	613
Eco47I	GGWCC	3 cut(s)	328, 543, 732
Eco52I	CGGCCG	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	907
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	3 cut(s)	501, 705, 998
EcoT38I	GRGCYC	2 cut(s)	377, 831
EgeI	GGCGCC	2 cut(s)	448, 552
EheI	GGCGCC	2 cut(s)	448, 552
ErhI	CCWWGG	3 cut(s)	501, 705, 998
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	3 cut(s)	505, 622, 670
FaiI	YATR	6 cut(s)	503, 620, 668, 812, 875, 927
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	501, 618, 666
FauI	CCCGC	3 cut(s)	138, 166, 366
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	2 cut(s)	377, 912
FriOI	GRGCYC	2 cut(s)	377, 831
FspBI	CTAG	2 cut(s)	51, 999
GlaI	GCGC	3 cut(s)	389, 448, 552
GsaI	CCCAGC	2 cut(s)	415, 862
GsuI	CTGGAG	2 cut(s)	361, 368
HaeII	RGCGCY	2 cut(s)	450, 554
HaeIII	GGCC	4 cut(s)	317, 410, 427, 614
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	3 cut(s)	390, 449, 553
Hin1I	GRCGYC	3 cut(s)	447, 551, 743
Hin1II	CATG	3 cut(s)	505, 622, 670
Hin6I	GCGC	3 cut(s)	388, 447, 551
HinP1I	GCGC	3 cut(s)	388, 447, 551
HindIII	AAGCTT	2 cut(s)	80, 299
HinfI	GANTC	9 cut(s)	166, 340, 352, 599, 653, 763, 769, 775, 943
HphI	GGTGA	2 cut(s)	347, 714
Hpy166II	GTNNAC	3 cut(s)	259, 546, 586
Hpy188III	TCNNGA	3 cut(s)	337, 440, 693
Hpy8I	GTNNAC	3 cut(s)	259, 546, 586
Hpy99I	CGWCG	3 cut(s)	446, 826, 886
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	5 cut(s)	543, 583, 846, 882, 982
HpyCH4IV	ACGT	1 cut(s)	288
HpyF3I	CTNAG	4 cut(s)	225, 459, 795, 960
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	3 cut(s)	447, 551, 743
Hsp92II	CATG	3 cut(s)	505, 622, 670
HspAI	GCGC	3 cut(s)	388, 447, 551
KasI	GGCGCC	2 cut(s)	446, 550
KroI	GCCGGC	2 cut(s)	313, 647
KroNI	GCCGGC	2 cut(s)	315, 649
KspI	CCGCGG	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	55, 93, 534
Lsp1109I	GCAGC	6 cut(s)	232, 241, 691, 694, 796, 799
LweI	GCATC	2 cut(s)	399, 890
MaeI	CTAG	2 cut(s)	51, 999
MaeII	ACGT	1 cut(s)	288
MalI	GATC	3 cut(s)	57, 95, 536
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	3 cut(s)	55, 93, 534
MboII	GAAGA	4 cut(s)	9, 12, 15, 428
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	377, 831
MluCI	AATT	3 cut(s)	121, 866, 907
Mly113I	GGCGCC	2 cut(s)	447, 551
MlyI	GAGTC	3 cut(s)	334, 608, 952
MmeI	TCCRAC	3 cut(s)	418, 602, 804
MreI	CGCCGGCG	1 cut(s)	647
MroNI	GCCGGC	2 cut(s)	313, 647
MroXI	GAANNNNTTC	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	898
MspA1I	CMGCKG	3 cut(s)	406, 515, 556
MspR9I	CCNGG	2 cut(s)	379, 424
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	3 cut(s)	338, 515, 590
NaeI	GCCGGC	2 cut(s)	315, 649
NarI	GGCGCC	2 cut(s)	447, 551
NciI	CCSGG	1 cut(s)	424
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	3 cut(s)	55, 93, 534
NgoMIV	GCCGGC	2 cut(s)	313, 647
NlaIII	CATG	3 cut(s)	505, 622, 670
NmeAIII	GCCGAG	2 cut(s)	590, 966
NruI	TCGCGA	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 461
PdiI	GCCGGC	2 cut(s)	315, 649
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	6 cut(s)	166, 352, 653, 763, 769, 775
PinAI	ACCGGT	2 cut(s)	305, 330
PleI	GAGTC	3 cut(s)	334, 607, 951
PluTI	GGCGCC	2 cut(s)	450, 554
PpsI	GAGTC	3 cut(s)	334, 607, 951
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	377
PspFI	CCCAGC	2 cut(s)	411, 858
PspGI	CCWGG	1 cut(s)	377
PspPI	GGNCC	5 cut(s)	316, 328, 409, 543, 732
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	898
Rsr2I	CGGWCCG	1 cut(s)	328
RsrII	CGGWCCG	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	377
SacII	CCGCGG	1 cut(s)	516
Sau3AI	GATC	3 cut(s)	55, 93, 534
Sau96I	GGNCC	5 cut(s)	316, 328, 409, 543, 732
SchI	GAGTC	3 cut(s)	334, 608, 952
ScrFI	CCNGG	2 cut(s)	379, 424
SduI	GDGCHC	2 cut(s)	377, 831
SfaNI	GCATC	2 cut(s)	399, 890
SfoI	GGCGCC	2 cut(s)	448, 552
Sfr303I	CCGCGG	1 cut(s)	516
SgrAI	CRCCGGYG	1 cut(s)	647
SgrBI	CCGCGG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	328, 543, 732
SmiMI	CAYNNNNRTG	1 cut(s)	898
Sse9I	AATT	3 cut(s)	121, 866, 907
SspDI	GGCGCC	2 cut(s)	446, 550
SspMI	CTAG	2 cut(s)	51, 999
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	377, 422
StyI	CCWWGG	3 cut(s)	501, 705, 998
TaaI	ACNGT	5 cut(s)	543, 583, 846, 882, 982
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	126, 441
TaqII	GACCGA	1 cut(s)	906
TasI	AATT	3 cut(s)	121, 866, 907
TfiI	GAWTC	6 cut(s)	166, 352, 653, 763, 769, 775
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	6 cut(s)	220, 229, 679, 682, 784, 787
TspDTI	ATGAA	1 cut(s)	683
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	3 cut(s)	328, 543, 732
XagI	CCTNNNNNAGG	1 cut(s)	619
XapI	RAATTY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
XmaJI	CCTAGG	1 cut(s)	998
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	51, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.