Rh7BG441500

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013152
Physical Location & Seq
Forward (+)
50954805 .. 50958979
4175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG441500.1

Sequence Viewer

Length: 1008 bp
ATGGATAAGACCTCATCTTCTTCTACTGAAAACTCCACTGGTACCACTAGGGATCAGTACCTGAAGCACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCATAATCCGAAAACCCAATTTCGACCCGCCTCCTCCTCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCCCCAAAACCAAAACGCACCGCTTCAGCTCCAATCCTCTGCTTCGCAGCCTCAGCAGCCGCCCAATCAGCACCAGCCTCCGGTCTACAACATCAACAAGAACGATTTCAGGGATGTGGTTCAGAAGCTGACCGGTTCGCCGGCCCACACGCCGGACCGGTTCGCGACTCCTCCGCCGATTCACCCGCCGAAAACACAAAGCTCGAGGCTCCAGCGCATCCGCCCTCCGCCGCTGGCCCAGCTCGCCGCCCGGCCGCCTTCTCTTCTCGACGGCGCCGTTTCGGCTCAGCCGAACAACACCAACAACCCTCTCATTCCGCCCATGGGAACCGCCGCGGCTCATTTCGGCGGCGTGATCGGACGGTCCACGGCGCCGCTGTCTCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTTCCTCCACAACTCGCTCTCCTCCGGCGATTCTAATCAGAACATGAACCAGAAGCAGCAGCATTTCTCTGGATTTTCTCCCTTGGCTCCACTCGTCTCGCCTCGCTGGACCAACCTAACTCCACCGCCGCCGCAACCGGAGCAGAATCAGAATCAGAGCCAGCAGCTTCCTCAGCCGGAGCAGGCTATGGCTCCCTCGTCGGAGCCTCCACAACCTCCACAGTTTGCTTCCTCCCAGCCCCAATTCGCTATGCCACCGTCGCCACTTCCATTCGGATGCTTGAATTCGCCTCGGTCGCAGTATAATCTGCTTTCGCCGAGTCAGTTGGGGTTTCCTCAGCTCCCTCTGTCGCCGACTGTGCCGGTTCCAAGCCCTAGGTGGAGGGGTTTCTAA

Protein Analysis

335

Amino Acids

36.3

Weight (kDa)

10.23

Isoelectric Point (pI)

87.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 81 - 106 4e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78310
fragaria_vesca FvH4_5g36700
malus_domestica MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica Prupe.1G522100_v2.0.a1
pyrus_communis pycom15g33460
rosa_chinensis RchiOBHm_Chr7g0242681
rosa_laevigata RLG00000000888
rosa_multiflora Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii Rroxscaffold_3G00222590
rosa_rugosa Rorug07G0316200
rosa_samantha Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 3 cut(s) 41, 443, 541
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 255
AccII CGCG 3 cut(s) 335, 506, 581
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 422
AcsI RAATTY 1 cut(s) 898
AcuI CTGAAG 2 cut(s) 83, 179
AcyI GRCGYC 2 cut(s) 444, 542
AfaI GTAC 2 cut(s) 43, 59
AfiI CCNNNNNNNGG 5 cut(s) 250, 322, 494, 583, 612
AgeI ACCGGT 2 cut(s) 302, 327
AgsI TTSAA 1 cut(s) 898
AluBI AGCT 7 cut(s) 79, 199, 298, 372, 412, 781, 955
AluI AGCT 7 cut(s) 79, 199, 298, 372, 412, 781, 955
Alw26I GTCTC 3 cut(s) 555, 604, 715
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 2 cut(s) 61, 298
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 4 cut(s) 312, 405, 422, 603
ApeKI GCWGC 5 cut(s) 217, 226, 670, 673, 778
ApoI RAATTY 1 cut(s) 898
AsiGI ACCGGT 2 cut(s) 302, 327
Asp700I GAANNNNTTC 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 41
AspA2I CCTAGG 1 cut(s) 989
AspLEI GCGC 3 cut(s) 387, 446, 544
AspS9I GGNCC 5 cut(s) 313, 325, 406, 534, 723
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 373
AvaII GGWCC 3 cut(s) 325, 534, 723
AvrII CCTAGG 1 cut(s) 989
BanI GGYRCC 3 cut(s) 41, 443, 541
BbvCI CCTCAGC 3 cut(s) 222, 786, 951
BbvI GCAGC 5 cut(s) 229, 238, 682, 685, 790
BceAI ACGGC 3 cut(s) 431, 457, 555
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 555, 604, 715
BfaI CTAG 2 cut(s) 48, 990
BfoI RGCGCY 2 cut(s) 447, 545
BglI GCCNNNNNGGC 1 cut(s) 452
BglII AGATCT 1 cut(s) 90
BlnI CCTAGG 1 cut(s) 989
BlpI GCTNAGC 1 cut(s) 456
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 3 cut(s) 325, 534, 723
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 5 cut(s) 313, 325, 406, 534, 723
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 396, 881
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 3 cut(s) 222, 786, 951
Bpu1102I GCTNAGC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 2 cut(s) 444, 542
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 6 cut(s) 492, 504, 537, 696, 905, 989
BsaWI WCCGGW 4 cut(s) 250, 302, 327, 751
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 617, 647
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 322, 494, 583, 612
Bse118I RCCGGY 5 cut(s) 302, 310, 327, 595, 976
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 648
BseDI CCNNGG 6 cut(s) 492, 504, 537, 696, 905, 989
BseGI GGATG 3 cut(s) 289, 387, 896
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 250, 322, 494, 583, 612
BseMII CTCAG 4 cut(s) 236, 470, 800, 965
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 8 cut(s) 123, 126, 129, 132, 135, 330, 543, 625
BseX3I CGGCCG 1 cut(s) 422
BseXI GCAGC 5 cut(s) 229, 238, 682, 685, 790
BseYI CCCAGC 2 cut(s) 408, 849
Bsh1236I CGCG 3 cut(s) 335, 506, 581
Bsh1285I CGRYCG 3 cut(s) 425, 573, 911
BshFI GGCC 4 cut(s) 314, 407, 424, 605
BshNI GGYRCC 3 cut(s) 41, 443, 541
BshTI ACCGGT 2 cut(s) 302, 327
BsiEI CGRYCG 3 cut(s) 425, 573, 911
BsiHKCI CYCGRG 1 cut(s) 373
BslI CCNNNNNNNGG 5 cut(s) 250, 322, 494, 583, 612
BsmAI GTCTC 3 cut(s) 555, 604, 715
BsmBI CGTCTC 1 cut(s) 715
BsnI GGCC 4 cut(s) 314, 407, 424, 605
Bso31I GGTCTC 1 cut(s) 604
BsoBI CYCGRG 1 cut(s) 373
Bsp143I GATC 3 cut(s) 52, 90, 525
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 492
Bsp68I TCGCGA 1 cut(s) 335
BspANI GGCC 4 cut(s) 314, 407, 424, 605
BspCNI CTCAG 4 cut(s) 235, 469, 799, 964
BspFNI CGCG 3 cut(s) 335, 506, 581
BspPI GGATC 1 cut(s) 60
BspT107I GGYRCC 3 cut(s) 41, 443, 541
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 5 cut(s) 302, 310, 327, 595, 976
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 5 cut(s) 302, 310, 327, 595, 976
BssECI CCNNGG 6 cut(s) 492, 504, 537, 696, 905, 989
BssMI GATC 3 cut(s) 52, 90, 525
BssNI GRCGYC 2 cut(s) 444, 542
BssT1I CCWWGG 3 cut(s) 492, 696, 989
Bst4CI ACNGT 5 cut(s) 534, 574, 837, 873, 973
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 444, 542
BstC8I GCNNGC 5 cut(s) 312, 405, 414, 776, 798
BstDEI CTNAG 4 cut(s) 222, 456, 786, 951
BstDSI CCRYGG 3 cut(s) 492, 504, 537
BstENI CCTNNNNNAGG 1 cut(s) 610
BstF5I GGATG 3 cut(s) 289, 387, 896
BstFNI CGCG 3 cut(s) 335, 506, 581
BstH2I RGCGCY 2 cut(s) 447, 545
BstHHI GCGC 3 cut(s) 387, 446, 544
BstKTI GATC 3 cut(s) 55, 93, 528
BstMAI GTCTC 3 cut(s) 555, 604, 715
BstMBI GATC 3 cut(s) 52, 90, 525
BstMCI CGRYCG 3 cut(s) 425, 573, 911
BstSCI CCNGG 1 cut(s) 419
BstUI CGCG 3 cut(s) 335, 506, 581
BstV1I GCAGC 5 cut(s) 229, 238, 682, 685, 790
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 422
BsuRI GGCC 4 cut(s) 314, 407, 424, 605
BtgI CCRYGG 3 cut(s) 492, 504, 537
BtsCI GGATG 3 cut(s) 289, 387, 896
BtsIMutI CAGTG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 335
Cac8I GCNNGC 5 cut(s) 312, 405, 414, 776, 798
CaiI CAGNNNCTG 2 cut(s) 61, 298
CfoI GCGC 3 cut(s) 387, 446, 544
Cfr10I RCCGGY 5 cut(s) 302, 310, 327, 595, 976
Cfr13I GGNCC 5 cut(s) 313, 325, 406, 534, 723
Cfr42I CCGCGG 1 cut(s) 507
CpoI CGGWCCG 1 cut(s) 325
Csp6I GTAC 2 cut(s) 42, 58
CspAI ACCGGT 2 cut(s) 302, 327
CspI CGGWCCG 1 cut(s) 325
CviAII CATG 3 cut(s) 493, 610, 658
CviQI GTAC 2 cut(s) 42, 58
DdeI CTNAG 4 cut(s) 222, 456, 786, 951
DinI GGCGCC 2 cut(s) 445, 543
DpnI GATC 3 cut(s) 54, 92, 527
DpnII GATC 3 cut(s) 52, 90, 525
EaeI YGGCCR 1 cut(s) 422
EagI CGGCCG 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 6 cut(s) 138, 333, 380, 387, 477, 602
EclXI CGGCCG 1 cut(s) 422
Eco130I CCWWGG 3 cut(s) 492, 696, 989
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 3 cut(s) 325, 534, 723
Eco52I CGGCCG 1 cut(s) 422
Eco57I CTGAAG 2 cut(s) 83, 179
Eco88I CYCGRG 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 492, 696, 989
EgeI GGCGCC 2 cut(s) 445, 543
EheI GGCGCC 2 cut(s) 445, 543
ErhI CCWWGG 3 cut(s) 492, 696, 989
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 3 cut(s) 496, 613, 661
FaiI YATR 7 cut(s) 104, 494, 611, 659, 803, 866, 918
FatI CATG 3 cut(s) 492, 609, 657
FauI CCCGC 3 cut(s) 135, 163, 363
FblI GTMKAC 1 cut(s) 255
FokI GGATG 3 cut(s) 296, 374, 903
FspBI CTAG 2 cut(s) 48, 990
GlaI GCGC 3 cut(s) 386, 445, 543
GsaI CCCAGC 2 cut(s) 412, 853
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 2 cut(s) 447, 545
HaeIII GGCC 4 cut(s) 314, 407, 424, 605
HhaI GCGC 3 cut(s) 387, 446, 544
Hin1I GRCGYC 2 cut(s) 444, 542
Hin1II CATG 3 cut(s) 496, 613, 661
Hin6I GCGC 3 cut(s) 385, 444, 542
HinP1I GCGC 3 cut(s) 385, 444, 542
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 8 cut(s) 163, 337, 349, 590, 644, 760, 766, 934
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 256, 537, 577
Hpy188III TCNNGA 3 cut(s) 334, 437, 684
Hpy8I GTNNAC 3 cut(s) 256, 537, 577
Hpy99I CGWCG 3 cut(s) 443, 817, 877
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 5 cut(s) 534, 574, 837, 873, 973
HpyF3I CTNAG 4 cut(s) 222, 456, 786, 951
Hsp92I GRCGYC 2 cut(s) 444, 542
Hsp92II CATG 3 cut(s) 496, 613, 661
HspAI GCGC 3 cut(s) 385, 444, 542
KasI GGCGCC 2 cut(s) 443, 541
KpnI GGTACC 1 cut(s) 45
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 3 cut(s) 52, 90, 525
LmnI GCTCC 9 cut(s) 163, 204, 384, 706, 754, 793, 811, 817, 960
Lsp1109I GCAGC 5 cut(s) 229, 238, 682, 685, 790
LweI GCATC 2 cut(s) 396, 881
MaeI CTAG 2 cut(s) 48, 990
MalI GATC 3 cut(s) 54, 92, 527
MbiI CCGCTC 1 cut(s) 158
MboI GATC 3 cut(s) 52, 90, 525
MboII GAAGA 3 cut(s) 9, 12, 425
MflI RGATCY 1 cut(s) 90
MluCI AATT 3 cut(s) 118, 857, 898
Mly113I GGCGCC 2 cut(s) 444, 542
MlyI GAGTC 3 cut(s) 331, 599, 943
MmeI TCCRAC 2 cut(s) 593, 795
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 889
MspA1I CMGCKG 3 cut(s) 403, 506, 547
MspR9I CCNGG 1 cut(s) 421
MvnI CGCG 3 cut(s) 335, 506, 581
NaeI GCCGGC 1 cut(s) 312
NarI GGCGCC 2 cut(s) 444, 542
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 1 cut(s) 492
NdeII GATC 3 cut(s) 52, 90, 525
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 496, 613, 661
NmeAIII GCCGAG 2 cut(s) 581, 957
NruI TCGCGA 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 458
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 5 cut(s) 163, 349, 644, 760, 766
PinAI ACCGGT 2 cut(s) 302, 327
PleI GAGTC 3 cut(s) 331, 598, 942
PluTI GGCGCC 2 cut(s) 447, 545
PpsI GAGTC 3 cut(s) 331, 598, 942
PspFI CCCAGC 2 cut(s) 408, 849
PspPI GGNCC 5 cut(s) 313, 325, 406, 534, 723
PspXI VCTCGAGB 1 cut(s) 373
PstNI CAGNNNCTG 2 cut(s) 61, 298
PsuI RGATCY 1 cut(s) 90
RruI TCGCGA 1 cut(s) 335
RsaI GTAC 2 cut(s) 43, 59
RsaNI GTAC 2 cut(s) 42, 58
RseI CAYNNNNRTG 1 cut(s) 889
Rsr2I CGGWCCG 1 cut(s) 325
RsrII CGGWCCG 1 cut(s) 325
SacII CCGCGG 1 cut(s) 507
Sau3AI GATC 3 cut(s) 52, 90, 525
Sau96I GGNCC 5 cut(s) 313, 325, 406, 534, 723
SchI GAGTC 3 cut(s) 331, 599, 943
ScrFI CCNGG 1 cut(s) 421
SfaNI GCATC 2 cut(s) 396, 881
SfoI GGCGCC 2 cut(s) 445, 543
Sfr274I CTCGAG 1 cut(s) 373
Sfr303I CCGCGG 1 cut(s) 507
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 3 cut(s) 325, 534, 723
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 889
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 3 cut(s) 118, 857, 898
SspDI GGCGCC 2 cut(s) 443, 541
SspMI CTAG 2 cut(s) 48, 990
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 3 cut(s) 492, 696, 989
TaaI ACNGT 5 cut(s) 534, 574, 837, 873, 973
TaqI TCGA 3 cut(s) 123, 374, 438
TaqII GACCGA 1 cut(s) 897
TasI AATT 3 cut(s) 118, 857, 898
TfiI GAWTC 5 cut(s) 163, 349, 644, 760, 766
TscAI CASTG 1 cut(s) 43
TseI GCWGC 5 cut(s) 217, 226, 670, 673, 778
TspDTI ATGAA 1 cut(s) 674
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 3 cut(s) 325, 534, 723
XagI CCTNNNNNAGG 1 cut(s) 610
XapI RAATTY 1 cut(s) 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 990
XhoI CTCGAG 1 cut(s) 373
XmaJI CCTAGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 48, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.