Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Forward (+)

26920022 .. 26921425

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATAACAAGACTTCTTCATCTTCTACTGAAAACACTACTAGTAGCAATAGAGATCAGTACCTGAAACACCTCAACAAGCTCTCCCACAAGATCTCCAAACCCGTGACCCGAAAACCCAACTTCGACCCGCCTCCTGTTCCGGCTCCCAACCCCCAAAACGCACCGCTTCAGCAGCTCCAATCCTCTGCTTCGCAGCCCAATCAGCACCAGCCTCCGGTCTACAACATCAACAAGAACGATTTTCGGGACGTGGTTCAGAAGCTGACCGGTTCACCGGCCCACACGGACCGGTTCGCGACTCCTCCGCCGATTCATCCGCCGAAAACCCAGAGCTCGCGGCTCCAGCGCATCCGCCCTCCGCCGCTGGCCCAGCTCGCCTCCCGCCCGCCTTCTCTGCTCGACGGCGCCGTTTCGGCTCAGCCGAATAACAACAACAACAACAATAACTCTCTCATTCCGCCTATGGGCGCCGCCGCCGCTCATTTCGGCGGCGTCATGGGAAGGTCCACCGCGCCGCTCTCGCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTACCTCCACAACTCGCTGTCCACTGGTGATTCGAATCCGAATATGAACCAGAAGCAGCAGCAGCATTTCTCTGGATTCTCGCCGCTGGCGCCGCTCGTCTCGCCCCGCTGGACCAACCTGACCCCTCCGCCGCAACCGGAGCAGAATCAAAATGAGAATCAGAACCAGAATCAGCAGGTTCCTCAGCCGGAGCTGGGACAGGGTATGGCACCCTCGTCGGAAGCTCCTGCTCCGGCGGCATCCTCCCAGCCCCAATTCGCCATGCCTGCGTCGCCACTTCCATTCGGATGCTTGAATTCGCCTCGGTCGCAGTATGGTTTGCTTTCCCCAACTCAGTTAGGGTTTCCTCAGCTTCCTCTCTCACCGACGGTGCCTGTTCCAAGCCCTAGGTGGAGGGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

331

Amino Acids

35.66

Weight (kDa)

10.05

Isoelectric Point (pI)

81.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	70 - 95	4e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	754
Acc65I	GGTACC	1 cut(s)	588
AccB1I	GGYRCC	6 cut(s)	407, 470, 588, 676, 796, 958
AccBSI	CCGCTC	3 cut(s)	482, 520, 682
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	4 cut(s)	299, 340, 515, 554
AcsI	RAATTY	1 cut(s)	883
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	4 cut(s)	408, 471, 495, 677
AfaI	GTAC	2 cut(s)	62, 590
AfiI	CCNNNNNNNGG	5 cut(s)	217, 467, 556, 585, 782
AgeI	ACCGGT	2 cut(s)	269, 291
AgsI	TTSAA	1 cut(s)	883
AhlI	ACTAGT	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	8 cut(s)	82, 178, 265, 336, 376, 781, 812, 940
AluI	AGCT	8 cut(s)	82, 178, 265, 336, 376, 781, 812, 940
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	577, 691
AlwNI	CAGNNNCTG	2 cut(s)	64, 265
AoxI	GGCC	3 cut(s)	279, 369, 576
ApeKI	GCWGC	5 cut(s)	175, 196, 643, 646, 649
ApoI	RAATTY	1 cut(s)	883
AsiGI	ACCGGT	2 cut(s)	269, 291
Asp718I	GGTACC	1 cut(s)	588
AspA2I	CCTAGG	1 cut(s)	974
AspLEI	GCGC	5 cut(s)	351, 410, 473, 517, 679
AspS9I	GGNCC	5 cut(s)	280, 289, 370, 507, 699
AsuHPI	GGTGA	3 cut(s)	267, 626, 942
AsuII	TTCGAA	1 cut(s)	620
AvaII	GGWCC	3 cut(s)	289, 507, 699
AvrII	CCTAGG	1 cut(s)	974
BanI	GGYRCC	6 cut(s)	407, 470, 588, 676, 796, 958
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvCI	CCTCAGC	2 cut(s)	771, 936
BbvI	GCAGC	5 cut(s)	187, 208, 655, 658, 661
BceAI	ACGGC	2 cut(s)	395, 421
BcgI	CGANNNNNNTGC	2 cut(s)	786, 820
BcoDI	GTCTC	2 cut(s)	577, 691
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 975, 991
BfoI	RGCGCY	3 cut(s)	411, 474, 680
BfuAI	ACCTGC	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	93
BlnI	CCTAGG	1 cut(s)	974
BlpI	GCTNAGC	1 cut(s)	420
Bme18I	GGWCC	3 cut(s)	289, 507, 699
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	5 cut(s)	280, 289, 370, 507, 699
BmiI	GGNNCC	9 cut(s)	147, 344, 409, 472, 590, 678, 768, 798, 960
BmsI	GCATC	3 cut(s)	360, 836, 866
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	2 cut(s)	771, 936
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	4 cut(s)	408, 471, 495, 677
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	890, 974
BsaWI	WCCGGW	4 cut(s)	217, 269, 291, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 80, 98, 110
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 467, 556, 585, 782
Bse118I	RCCGGY	4 cut(s)	269, 277, 291, 568
Bse1I	ACTGG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	890, 974
BseGI	GGATG	4 cut(s)	316, 351, 827, 881
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	5 cut(s)	217, 467, 556, 585, 782
BseMII	CTCAG	4 cut(s)	434, 785, 935, 950
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	5 cut(s)	187, 208, 655, 658, 661
BseYI	CCCAGC	3 cut(s)	372, 781, 834
Bsh1236I	CGCG	4 cut(s)	299, 340, 515, 554
Bsh1285I	CGRYCG	2 cut(s)	546, 896
BshFI	GGCC	3 cut(s)	281, 371, 578
BshNI	GGYRCC	6 cut(s)	407, 470, 588, 676, 796, 958
BshTI	ACCGGT	2 cut(s)	269, 291
BsiEI	CGRYCG	2 cut(s)	546, 896
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	9 cut(s)	143, 218, 270, 278, 292, 569, 725, 776, 821
BslFI	GGGAC	2 cut(s)	263, 798
BslI	CCNNNNNNNGG	5 cut(s)	217, 467, 556, 585, 782
BsmAI	GTCTC	2 cut(s)	577, 691
BsmBI	CGTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	263, 798
BsnI	GGCC	3 cut(s)	281, 371, 578
Bso31I	GGTCTC	1 cut(s)	577
Bsp119I	TTCGAA	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	55, 93
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp68I	TCGCGA	1 cut(s)	299
BspANI	GGCC	3 cut(s)	281, 371, 578
BspCNI	CTCAG	4 cut(s)	433, 784, 934, 949
BspFNI	CGCG	4 cut(s)	299, 340, 515, 554
BspLI	GGNNCC	9 cut(s)	147, 344, 409, 472, 590, 678, 768, 798, 960
BspMI	ACCTGC	1 cut(s)	754
BspT104I	TTCGAA	1 cut(s)	620
BspT107I	GGYRCC	6 cut(s)	407, 470, 588, 676, 796, 958
BspTNI	GGTCTC	1 cut(s)	577
BsrBI	CCGCTC	3 cut(s)	482, 520, 682
BsrFI	RCCGGY	4 cut(s)	269, 277, 291, 568
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	4 cut(s)	269, 277, 291, 568
BssECI	CCNNGG	2 cut(s)	890, 974
BssMI	GATC	2 cut(s)	55, 93
BssNI	GRCGYC	4 cut(s)	408, 471, 495, 677
BssT1I	CCWWGG	1 cut(s)	974
Bst4CI	ACNGT	2 cut(s)	547, 958
BstACI	GRCGYC	4 cut(s)	408, 471, 495, 677
BstBI	TTCGAA	1 cut(s)	620
BstC8I	GCNNGC	6 cut(s)	338, 369, 378, 389, 675, 855
BstDEI	CTNAG	4 cut(s)	420, 771, 921, 936
BstENI	CCTNNNNNAGG	1 cut(s)	583
BstF5I	GGATG	4 cut(s)	316, 351, 827, 881
BstFNI	CGCG	4 cut(s)	299, 340, 515, 554
BstH2I	RGCGCY	3 cut(s)	411, 474, 680
BstHHI	GCGC	5 cut(s)	351, 410, 473, 517, 679
BstKTI	GATC	2 cut(s)	58, 96
BstMAI	GTCTC	2 cut(s)	577, 691
BstMBI	GATC	2 cut(s)	55, 93
BstMCI	CGRYCG	2 cut(s)	546, 896
BstUI	CGCG	4 cut(s)	299, 340, 515, 554
BstV1I	GCAGC	5 cut(s)	187, 208, 655, 658, 661
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	281, 371, 578
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	316, 351, 827, 881
BtsIMutI	CAGTG	1 cut(s)	609
BtuMI	TCGCGA	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	6 cut(s)	338, 369, 378, 389, 675, 855
CaiI	CAGNNNCTG	2 cut(s)	64, 265
CfoI	GCGC	5 cut(s)	351, 410, 473, 517, 679
Cfr10I	RCCGGY	4 cut(s)	269, 277, 291, 568
Cfr13I	GGNCC	5 cut(s)	280, 289, 370, 507, 699
CpoI	CGGWCCG	1 cut(s)	289
CseI	GACGC	2 cut(s)	484, 846
Csp6I	GTAC	2 cut(s)	61, 589
CspAI	ACCGGT	2 cut(s)	269, 291
CspI	CGGWCCG	1 cut(s)	289
CviAII	CATG	3 cut(s)	499, 583, 850
CviQI	GTAC	2 cut(s)	61, 589
DdeI	CTNAG	4 cut(s)	420, 771, 921, 936
DinI	GGCGCC	3 cut(s)	409, 472, 678
DpnI	GATC	2 cut(s)	57, 95
DpnII	GATC	2 cut(s)	55, 93
EciI	GGCGGA	7 cut(s)	297, 309, 344, 351, 450, 575, 705
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	974
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	3 cut(s)	289, 507, 699
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	974
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	3 cut(s)	409, 472, 678
EheI	GGCGCC	3 cut(s)	409, 472, 678
ErhI	CCWWGG	1 cut(s)	974
Esp3I	CGTCTC	1 cut(s)	691
FaeI	CATG	3 cut(s)	502, 586, 853
FaiI	YATR	7 cut(s)	467, 500, 584, 632, 794, 851, 903
FaqI	GGGAC	2 cut(s)	263, 798
FatI	CATG	3 cut(s)	498, 582, 849
FauI	CCCGC	4 cut(s)	138, 392, 396, 701
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	4 cut(s)	303, 338, 814, 888
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	3 cut(s)	42, 975, 991
GlaI	GCGC	5 cut(s)	350, 409, 472, 516, 678
GsaI	CCCAGC	3 cut(s)	376, 785, 838
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	3 cut(s)	411, 474, 680
HaeIII	GGCC	3 cut(s)	281, 371, 578
HapII	CCGG	9 cut(s)	143, 218, 270, 278, 292, 569, 725, 776, 821
HgaI	GACGC	2 cut(s)	484, 846
HhaI	GCGC	5 cut(s)	351, 410, 473, 517, 679
Hin1I	GRCGYC	4 cut(s)	408, 471, 495, 677
Hin1II	CATG	3 cut(s)	502, 586, 853
Hin6I	GCGC	5 cut(s)	349, 408, 471, 515, 677
HinP1I	GCGC	5 cut(s)	349, 408, 471, 515, 677
HinfI	GANTC	9 cut(s)	301, 313, 563, 617, 622, 663, 733, 745, 757
HpaII	CCGG	9 cut(s)	143, 218, 270, 278, 292, 569, 725, 776, 821
HphI	GGTGA	3 cut(s)	267, 626, 942
Hpy166II	GTNNAC	5 cut(s)	223, 275, 510, 550, 609
Hpy188I	TCNGA	6 cut(s)	261, 543, 627, 750, 808, 875
Hpy188III	TCNNGA	3 cut(s)	248, 298, 660
Hpy8I	GTNNAC	5 cut(s)	223, 275, 510, 550, 609
Hpy99I	CGWCG	4 cut(s)	407, 808, 862, 958
HpyAV	CCTTC	2 cut(s)	402, 498
HpyCH4III	ACNGT	2 cut(s)	547, 958
HpyCH4IV	ACGT	1 cut(s)	252
HpyF3I	CTNAG	4 cut(s)	420, 771, 921, 936
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	4 cut(s)	408, 471, 495, 677
Hsp92II	CATG	3 cut(s)	502, 586, 853
HspAI	GCGC	5 cut(s)	349, 408, 471, 515, 677
KasI	GGCGCC	3 cut(s)	407, 470, 676
KpnI	GGTACC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	55, 93
LmnI	GCTCC	7 cut(s)	151, 183, 348, 727, 778, 817, 823
Lsp1109I	GCAGC	5 cut(s)	187, 208, 655, 658, 661
LweI	GCATC	3 cut(s)	360, 836, 866
MaeI	CTAG	3 cut(s)	42, 975, 991
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	57, 95
MbiI	CCGCTC	3 cut(s)	482, 520, 682
MboI	GATC	2 cut(s)	55, 93
MboII	GAAGA	2 cut(s)	9, 15
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	2 cut(s)	842, 883
Mly113I	GGCGCC	3 cut(s)	408, 471, 677
MlyI	GAGTC	2 cut(s)	295, 572
MmeI	TCCRAC	2 cut(s)	566, 786
MslI	CAYNNNNRTG	1 cut(s)	874
MspA1I	CMGCKG	3 cut(s)	367, 673, 696
MspI	CCGG	9 cut(s)	143, 218, 270, 278, 292, 569, 725, 776, 821
MvnI	CGCG	4 cut(s)	299, 340, 515, 554
NarI	GGCGCC	3 cut(s)	408, 471, 677
NdeII	GATC	2 cut(s)	55, 93
NlaIII	CATG	3 cut(s)	502, 586, 853
NlaIV	GGNNCC	9 cut(s)	147, 344, 409, 472, 590, 678, 768, 798, 960
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	1 cut(s)	106
NruI	TCGCGA	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	2 cut(s)	408, 422
PfeI	GAWTC	7 cut(s)	313, 617, 622, 663, 733, 745, 757
PinAI	ACCGGT	2 cut(s)	269, 291
PleI	GAGTC	2 cut(s)	295, 571
PluTI	GGCGCC	3 cut(s)	411, 474, 680
PpsI	GAGTC	2 cut(s)	295, 571
Psp124BI	GAGCTC	1 cut(s)	338
PspFI	CCCAGC	3 cut(s)	372, 781, 834
PspN4I	GGNNCC	9 cut(s)	147, 344, 409, 472, 590, 678, 768, 798, 960
PspPI	GGNCC	5 cut(s)	280, 289, 370, 507, 699
PstNI	CAGNNNCTG	2 cut(s)	64, 265
PsuI	RGATCY	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	299
RsaI	GTAC	2 cut(s)	62, 590
RsaNI	GTAC	2 cut(s)	61, 589
RseI	CAYNNNNRTG	1 cut(s)	874
Rsr2I	CGGWCCG	1 cut(s)	289
RsrII	CGGWCCG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	55, 93
Sau96I	GGNCC	5 cut(s)	280, 289, 370, 507, 699
SchI	GAGTC	2 cut(s)	295, 572
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	3 cut(s)	360, 836, 866
SfoI	GGCGCC	3 cut(s)	409, 472, 678
SfuI	TTCGAA	1 cut(s)	620
SinI	GGWCC	3 cut(s)	289, 507, 699
SmiMI	CAYNNNNRTG	1 cut(s)	874
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	2 cut(s)	842, 883
SspDI	GGCGCC	3 cut(s)	407, 470, 676
SspMI	CTAG	3 cut(s)	42, 975, 991
SstI	GAGCTC	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	2 cut(s)	547, 958
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	126, 402, 620
TaqII	GACCGA	1 cut(s)	882
TasI	AATT	2 cut(s)	842, 883
TfiI	GAWTC	7 cut(s)	313, 617, 622, 663, 733, 745, 757
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	175, 196, 643, 646, 649
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	9, 305, 647
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	3 cut(s)	289, 507, 699
XagI	CCTNNNNNAGG	1 cut(s)	583
XapI	RAATTY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	975
XmaJI	CCTAGG	1 cut(s)	974
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	3 cut(s)	42, 975, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.