Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

45602137 .. 45603117

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1373500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATAAAAGCTGTCCCTCTTCAACTACTGCTTCAGCTGCTCTCACTACTGCCGCTTCCAGTGGCGGCGGCGGCAGCTCCACCACCACCACCAGAGACAACTACCTCAAACACCTCAACAAGCTTTCCCACAAGATCTCAAAACCCACCACCACCACCAACACTCACAACACCTTCCTTAAAAAACCCAACTTTGAAAACTCACCGCCGCCTCCTCCTCCGCTTCCTCTTCCTCCCCAACACCAGCAGCAGCATCAGCACCAGCCGCCGGTTTACAACATCAACAAAAACGACTTCCGTGACGTCGTTCAGAAGCTCACCGGCTCTCCCGCCCACGACCGCTTCTCCAACCCCCCGCCGCCGGTTCACCCACCCAAGCCACAAATCAGTTCCCGCCTCCAGCGCATCCGCCCTCCCCCTCTCGCGCAGCTTAACAACCGACCCCCTCCCTCGTTAGAATGCGCCGCTCCACCCCCGAACACCAATAATCCAATCATCCCACCCATGGGATCCGCCGCCGCTCACTTCAACTCCATCGGACGGTCCACAACCCCTCTCTCTCCTCTCCCTCCTTTCCCAACCGTACACTCGGCGGCTGAATCCCCCGTCTCAGCCTACATGCGGTACCTCAACAGCTCAATCTCAGCCGTCGATTCTAACAATCAGAAGTTCTCGGGATTCTCGCCTCTGGCCCCACTTGTCTCGCCGCGCTGGACCAATCTGACGCCGCCTGCGCAGCAGAATCAGCAGGTTGCGCCGCCGCAGCAGGGGATAGGTACATCAGCGAATCAACAACCGCAGACAACGACGGCGATAGCGTCACAGCCGCAGTTCGCGATGCCTCCATCGCCGCTTCCTTTCGGGTGCTTGAATTCGCCGCGATCGCCTTACCCATCGCTTTCCCCAAATCAATTAGGGTTTCCTCAGCTCCCGCTGTCGCCGACAGTTCCTGTATCAAGCCCTAGATGGAGAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

327

Amino Acids

34.99

Weight (kDa)

10.33

Isoelectric Point (pI)

78.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	87 - 113	2.1e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
Acc16I	TGCGCA	1 cut(s)	735
Acc36I	ACCTGC	1 cut(s)	739
Acc65I	GGTACC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	624
AccBSI	CCGCTC	2 cut(s)	467, 521
AccII	CGCG	4 cut(s)	425, 709, 836, 880
AclWI	GGATC	2 cut(s)	504, 517
AcsI	RAATTY	1 cut(s)	871
AcuI	CTGAAG	1 cut(s)	18
AcyI	GRCGYC	2 cut(s)	303, 725
AfaI	GTAC	3 cut(s)	585, 626, 778
AfiI	CCNNNNNNNGG	7 cut(s)	268, 361, 505, 506, 540, 621, 767
AgsI	TTSAA	4 cut(s)	24, 197, 529, 871
AluBI	AGCT	8 cut(s)	12, 38, 78, 124, 316, 430, 636, 928
AluI	AGCT	8 cut(s)	12, 38, 78, 124, 316, 430, 636, 928
Alw26I	GTCTC	3 cut(s)	90, 613, 706
AlwI	GGATC	2 cut(s)	504, 517
AlwNI	CAGNNNCTG	1 cut(s)	950
Ama87I	CYCGRG	1 cut(s)	673
AoxI	GGCC	1 cut(s)	690
ApeKI	GCWGC	7 cut(s)	38, 75, 247, 250, 427, 736, 763
ApoI	RAATTY	1 cut(s)	871
AsiSI	GCGATCGC	1 cut(s)	884
Asp718I	GGTACC	1 cut(s)	624
AspLEI	GCGC	6 cut(s)	405, 427, 464, 711, 736, 757
AspS9I	GGNCC	3 cut(s)	543, 691, 714
AsuHPI	GGTGA	3 cut(s)	195, 310, 359
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	543, 714
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	7 cut(s)	25, 87, 259, 262, 439, 748, 775
BccI	CCATC	4 cut(s)	542, 853, 901, 960
BceAI	ACGGC	2 cut(s)	632, 825
BcoDI	GTCTC	3 cut(s)	90, 613, 706
BfaI	CTAG	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	739
BglII	AGATCT	1 cut(s)	135
Bme18I	GGWCC	2 cut(s)	543, 714
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	3 cut(s)	543, 691, 714
BmiI	GGNNCC	3 cut(s)	511, 626, 693
BmsI	GCATC	3 cut(s)	262, 414, 828
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	924
BsaHI	GRCGYC	2 cut(s)	303, 725
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	6 cut(s)	310, 329, 340, 359, 515, 545
Bsc4I	CCNNNNNNNGG	7 cut(s)	268, 361, 505, 506, 540, 621, 767
Bse118I	RCCGGY	3 cut(s)	268, 320, 361
Bse1I	ACTGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	405, 495
BseLI	CCNNNNNNNGG	7 cut(s)	268, 361, 505, 506, 540, 621, 767
BseMII	CTCAG	3 cut(s)	624, 657, 938
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	3 cut(s)	204, 207, 552
BseXI	GCAGC	7 cut(s)	25, 87, 259, 262, 439, 748, 775
Bsh1236I	CGCG	4 cut(s)	425, 709, 836, 880
Bsh1285I	CGRYCG	2 cut(s)	340, 884
BshFI	GGCC	1 cut(s)	692
BshNI	GGYRCC	1 cut(s)	624
BsiEI	CGRYCG	2 cut(s)	340, 884
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	3 cut(s)	269, 321, 362
BslI	CCNNNNNNNGG	7 cut(s)	268, 361, 505, 506, 540, 621, 767
BsmAI	GTCTC	3 cut(s)	90, 613, 706
BsmBI	CGTCTC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	135, 509, 881
Bsp19I	CCATGG	1 cut(s)	504
Bsp68I	TCGCGA	1 cut(s)	836
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	3 cut(s)	623, 656, 937
BspFNI	CGCG	4 cut(s)	425, 709, 836, 880
BspLI	GGNNCC	3 cut(s)	511, 626, 693
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	2 cut(s)	504, 517
BspT107I	GGYRCC	1 cut(s)	624
BsrBI	CCGCTC	2 cut(s)	467, 521
BsrFI	RCCGGY	3 cut(s)	268, 320, 361
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	3 cut(s)	268, 320, 361
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	135, 509, 881
BssNI	GRCGYC	2 cut(s)	303, 725
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	543, 583, 946
Bst6I	CTCTTC	2 cut(s)	25, 234
BstACI	GRCGYC	2 cut(s)	303, 725
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	3 cut(s)	610, 643, 924
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	405, 495
BstFNI	CGCG	4 cut(s)	425, 709, 836, 880
BstHHI	GCGC	6 cut(s)	405, 427, 464, 711, 736, 757
BstKTI	GATC	3 cut(s)	138, 512, 884
BstMAI	GTCTC	3 cut(s)	90, 613, 706
BstMBI	GATC	3 cut(s)	135, 509, 881
BstMCI	CGRYCG	2 cut(s)	340, 884
BstNSI	RCATGY	1 cut(s)	622
BstUI	CGCG	4 cut(s)	425, 709, 836, 880
BstV1I	GCAGC	7 cut(s)	25, 87, 259, 262, 439, 748, 775
BstX2I	RGATCY	2 cut(s)	135, 509
BstYI	RGATCY	2 cut(s)	135, 509
BsuRI	GGCC	1 cut(s)	692
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	3 cut(s)	831, 851, 879
BtsCI	GGATG	2 cut(s)	405, 495
BtsIMutI	CAGTG	1 cut(s)	67
BtuMI	TCGCGA	1 cut(s)	836
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	1 cut(s)	950
CfoI	GCGC	6 cut(s)	405, 427, 464, 711, 736, 757
Cfr10I	RCCGGY	3 cut(s)	268, 320, 361
Cfr13I	GGNCC	3 cut(s)	543, 691, 714
CseI	GACGC	2 cut(s)	733, 807
Csp6I	GTAC	3 cut(s)	584, 625, 777
CviAII	CATG	2 cut(s)	505, 619
CviQI	GTAC	3 cut(s)	584, 625, 777
DdeI	CTNAG	3 cut(s)	610, 643, 924
DpnI	GATC	3 cut(s)	137, 511, 883
DpnII	GATC	3 cut(s)	135, 509, 881
Eam1104I	CTCTTC	2 cut(s)	25, 234
EarI	CTCTTC	2 cut(s)	25, 234
EciI	GGCGGA	2 cut(s)	398, 502
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	543, 714
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	2 cut(s)	508, 622
FaiI	YATR	2 cut(s)	506, 620
FatI	CATG	2 cut(s)	504, 618
FauI	CCCGC	4 cut(s)	337, 363, 401, 939
FokI	GGATG	2 cut(s)	392, 482
FspBI	CTAG	1 cut(s)	963
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	6 cut(s)	404, 426, 463, 710, 735, 756
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	3 cut(s)	269, 321, 362
HgaI	GACGC	2 cut(s)	733, 807
HhaI	GCGC	6 cut(s)	405, 427, 464, 711, 736, 757
Hin1I	GRCGYC	2 cut(s)	303, 725
Hin1II	CATG	2 cut(s)	508, 622
Hin6I	GCGC	6 cut(s)	403, 425, 462, 709, 734, 755
HinP1I	GCGC	6 cut(s)	403, 425, 462, 709, 734, 755
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	5 cut(s)	599, 653, 678, 742, 787
HpaII	CCGG	3 cut(s)	269, 321, 362
HphI	GGTGA	3 cut(s)	195, 310, 359
Hpy166II	GTNNAC	4 cut(s)	274, 367, 546, 586
Hpy188I	TCNGA	5 cut(s)	312, 539, 666, 723, 980
Hpy188III	TCNNGA	2 cut(s)	675, 835
Hpy8I	GTNNAC	4 cut(s)	274, 367, 546, 586
Hpy99I	CGWCG	3 cut(s)	308, 653, 811
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	543, 583, 946
HpyCH4IV	ACGT	1 cut(s)	303
HpyF3I	CTNAG	3 cut(s)	610, 643, 924
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	303, 725
Hsp92II	CATG	2 cut(s)	508, 622
HspAI	GCGC	6 cut(s)	403, 425, 462, 709, 734, 755
KpnI	GGTACC	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	135, 509, 881
LmnI	GCTCC	3 cut(s)	83, 472, 933
Lsp1109I	GCAGC	7 cut(s)	25, 87, 259, 262, 439, 748, 775
LweI	GCATC	3 cut(s)	262, 414, 828
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	299, 819
MalI	GATC	3 cut(s)	137, 511, 883
MbiI	CCGCTC	2 cut(s)	467, 521
MboI	GATC	3 cut(s)	135, 509, 881
MboII	GAAGA	2 cut(s)	12, 221
MflI	RGATCY	2 cut(s)	135, 509
MluCI	AATT	2 cut(s)	871, 911
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	2 cut(s)	180, 432
MspA1I	CMGCKG	2 cut(s)	38, 934
MspI	CCGG	3 cut(s)	269, 321, 362
Mva1269I	GAATGC	1 cut(s)	464
MvnI	CGCG	4 cut(s)	425, 709, 836, 880
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	135, 509, 881
NlaIII	CATG	2 cut(s)	508, 622
NlaIV	GGNNCC	3 cut(s)	511, 626, 693
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	2 cut(s)	299, 819
NruI	TCGCGA	1 cut(s)	836
NsbI	TGCGCA	1 cut(s)	735
NspI	RCATGY	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	5 cut(s)	599, 653, 678, 742, 787
Ple19I	CGATCG	1 cut(s)	884
PspN4I	GGNNCC	3 cut(s)	511, 626, 693
PspPI	GGNCC	3 cut(s)	543, 691, 714
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	2 cut(s)	135, 509
PvuI	CGATCG	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	38
RgaI	GCGATCGC	1 cut(s)	884
RruI	TCGCGA	1 cut(s)	836
RsaI	GTAC	3 cut(s)	585, 626, 778
RsaNI	GTAC	3 cut(s)	584, 625, 777
SaqAI	TTAA	2 cut(s)	180, 432
Sau3AI	GATC	3 cut(s)	135, 509, 881
Sau96I	GGNCC	3 cut(s)	543, 691, 714
SfaAI	GCGATCGC	1 cut(s)	884
SfaNI	GCATC	3 cut(s)	262, 414, 828
SgfI	GCGATCGC	1 cut(s)	884
SinI	GGWCC	2 cut(s)	543, 714
Sse9I	AATT	2 cut(s)	871, 911
SspMI	CTAG	1 cut(s)	963
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	543, 583, 946
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	651
TasI	AATT	2 cut(s)	871, 911
TfiI	GAWTC	5 cut(s)	599, 653, 678, 742, 787
Tru1I	TTAA	2 cut(s)	180, 432
Tru9I	TTAA	2 cut(s)	180, 432
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	299, 819
TseI	GCWGC	7 cut(s)	38, 75, 247, 250, 427, 736, 763
Tsp45I	GTSAC	2 cut(s)	299, 819
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	543, 714
XapI	RAATTY	1 cut(s)	871
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	1 cut(s)	963
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.