Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Forward (+)

65356423 .. 65358166

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG471200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATAAGACCTCATCTTCTTCTTCTACTGAAAACTCCACTGGTGCCACTAGGGATCAGTACCTGAAACACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCACAATCCGAAAACCCAATTTCGACCCGCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCCCCAAAACCAAAACGCACCGCTTCAGCTCCAATCCTCTGCTTCGCAGCCTCAGCAGCCCCCACAGCAGCCGCCGAATCAGCACCAGCCTCCGGTCTACAACATCAACAAGAACGATTTCAGGGACGTGGTTCAGAAGCTGACCGGTTCGCCGGCCCACACGCCGGACCGGTTCGCGACTCCTCCGCCGATTCACCCGCCCAAAACCCAGAGCTCGAGGCTCCAGCGCATCCGCCCTCCGCCGCTGGCCCAGCTCGCCGCCCGGCCTCCTTCTCTTCTCGACGGCGCCGTTTCGGCTCAGCCGAACAACACCAACAACAACAACAACCCTCTCATTCCGCCCATGGGGACCGCCGCGGCTCATTTCGGCGGCGTGATCGGACGGTCCACGGCACCGCTGTCGCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTTCCTCCACAACTCGCTCTCCTCCGGCGATTCTAATCAGAACATGAACCAGAAGCAGCAACATTTCTCTGGATTTTCTCCCTTGGCTCCACTCGTCTCGCCTCGCTGGACCAGCCTAACTCCACCGCCGCCGCAACCGGAGCAGAATCAGAATCAGAATCAGAGCCAGCAGCTTCCTCAGCCGGAGCAGGCTATGGCTCCCTCGTCGGAGCCTCCACAACCTCCACAGTTTGCTTCCTCCCAGCCCCAATTCGCTATGCCACTGTCGCCGCTTCCATTCGGATGCTTGAATTCGCCTCGGTCGCAGTATAATCTGCTTTCGCCGAGTCAGTTAGGGTTTCCTCAGCTCCCTCTGTCGCCGACTGTGCCGGTCCCAAGCCCTAGGTGGAGGGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

342

Amino Acids

37.08

Weight (kDa)

10.23

Isoelectric Point (pI)

86.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	83 - 108	4.1e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	44, 449, 556
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	3 cut(s)	341, 521, 596
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	919
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	5 cut(s)	256, 328, 509, 598, 627
AgeI	ACCGGT	2 cut(s)	308, 333
AgsI	TTSAA	1 cut(s)	919
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	7 cut(s)	82, 193, 304, 378, 418, 802, 976
AluI	AGCT	7 cut(s)	82, 193, 304, 378, 418, 802, 976
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	619, 730
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	2 cut(s)	64, 304
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	4 cut(s)	318, 411, 428, 618
ApeKI	GCWGC	5 cut(s)	211, 220, 232, 685, 799
ApoI	RAATTY	1 cut(s)	919
AsiGI	ACCGGT	2 cut(s)	308, 333
Asp700I	GAANNNNTTC	1 cut(s)	281
AspA2I	CCTAGG	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	393, 452
AspS9I	GGNCC	7 cut(s)	319, 331, 412, 513, 549, 738, 1000
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	5 cut(s)	331, 513, 549, 738, 1000
AvrII	CCTAGG	1 cut(s)	1010
BanI	GGYRCC	3 cut(s)	44, 449, 556
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	3 cut(s)	216, 807, 972
BbvI	GCAGC	5 cut(s)	223, 232, 244, 697, 811
BceAI	ACGGC	3 cut(s)	437, 463, 570
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	619, 730
BfaI	CTAG	2 cut(s)	51, 1011
BfoI	RGCGCY	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	93
BlnI	CCTAGG	1 cut(s)	1010
BlpI	GCTNAGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	5 cut(s)	331, 513, 549, 738, 1000
BmeT110I	CYCGRG	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	7 cut(s)	319, 331, 412, 513, 549, 738, 1000
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	402, 902
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	3 cut(s)	216, 807, 972
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	6 cut(s)	507, 519, 552, 711, 926, 1010
BsaWI	WCCGGW	4 cut(s)	256, 308, 333, 766
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 632, 662
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 328, 509, 598, 627
Bse118I	RCCGGY	5 cut(s)	308, 316, 333, 610, 997
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	663
BseDI	CCNNGG	6 cut(s)	507, 519, 552, 711, 926, 1010
BseGI	GGATG	2 cut(s)	393, 917
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	5 cut(s)	256, 328, 509, 598, 627
BseMII	CTCAG	4 cut(s)	230, 476, 821, 986
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	4 cut(s)	126, 129, 336, 640
BseXI	GCAGC	5 cut(s)	223, 232, 244, 697, 811
BseYI	CCCAGC	2 cut(s)	414, 870
Bsh1236I	CGCG	3 cut(s)	341, 521, 596
Bsh1285I	CGRYCG	2 cut(s)	588, 932
BshFI	GGCC	4 cut(s)	320, 413, 430, 620
BshNI	GGYRCC	3 cut(s)	44, 449, 556
BshTI	ACCGGT	2 cut(s)	308, 333
BsiEI	CGRYCG	2 cut(s)	588, 932
BsiHKAI	GWGCWC	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	379
BslFI	GGGAC	3 cut(s)	302, 526, 986
BslI	CCNNNNNNNGG	5 cut(s)	256, 328, 509, 598, 627
BsmAI	GTCTC	2 cut(s)	619, 730
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	3 cut(s)	302, 526, 986
BsnI	GGCC	4 cut(s)	320, 413, 430, 620
Bso31I	GGTCTC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	55, 93, 540
Bsp1720I	GCTNAGC	1 cut(s)	462
Bsp19I	CCATGG	1 cut(s)	507
Bsp68I	TCGCGA	1 cut(s)	341
BspANI	GGCC	4 cut(s)	320, 413, 430, 620
BspCNI	CTCAG	4 cut(s)	229, 475, 820, 985
BspFNI	CGCG	3 cut(s)	341, 521, 596
BspPI	GGATC	1 cut(s)	63
BspT107I	GGYRCC	3 cut(s)	44, 449, 556
BspTNI	GGTCTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	5 cut(s)	308, 316, 333, 610, 997
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	5 cut(s)	308, 316, 333, 610, 997
BssECI	CCNNGG	6 cut(s)	507, 519, 552, 711, 926, 1010
BssMI	GATC	3 cut(s)	55, 93, 540
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	3 cut(s)	507, 711, 1010
Bst4CI	ACNGT	5 cut(s)	549, 589, 858, 894, 994
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	5 cut(s)	318, 411, 420, 797, 819
BstDEI	CTNAG	4 cut(s)	216, 462, 807, 972
BstDSI	CCRYGG	3 cut(s)	507, 519, 552
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	2 cut(s)	393, 917
BstFNI	CGCG	3 cut(s)	341, 521, 596
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	393, 452
BstKTI	GATC	3 cut(s)	58, 96, 543
BstMAI	GTCTC	2 cut(s)	619, 730
BstMBI	GATC	3 cut(s)	55, 93, 540
BstMCI	CGRYCG	2 cut(s)	588, 932
BstSCI	CCNGG	1 cut(s)	425
BstUI	CGCG	3 cut(s)	341, 521, 596
BstV1I	GCAGC	5 cut(s)	223, 232, 244, 697, 811
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	320, 413, 430, 620
BtgI	CCRYGG	3 cut(s)	507, 519, 552
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	393, 917
BtsIMutI	CAGTG	2 cut(s)	39, 890
BtuMI	TCGCGA	1 cut(s)	341
Cac8I	GCNNGC	5 cut(s)	318, 411, 420, 797, 819
CaiI	CAGNNNCTG	2 cut(s)	64, 304
CfoI	GCGC	2 cut(s)	393, 452
Cfr10I	RCCGGY	5 cut(s)	308, 316, 333, 610, 997
Cfr13I	GGNCC	7 cut(s)	319, 331, 412, 513, 549, 738, 1000
Cfr42I	CCGCGG	1 cut(s)	522
CpoI	CGGWCCG	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	2 cut(s)	308, 333
CspI	CGGWCCG	1 cut(s)	331
CviAII	CATG	3 cut(s)	508, 625, 673
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	216, 462, 807, 972
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	3 cut(s)	57, 95, 542
DpnII	GATC	3 cut(s)	55, 93, 540
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	6 cut(s)	132, 339, 386, 393, 492, 617
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	3 cut(s)	507, 711, 1010
Eco24I	GRGCYC	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	5 cut(s)	331, 513, 549, 738, 1000
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	919
EcoT14I	CCWWGG	3 cut(s)	507, 711, 1010
EcoT38I	GRGCYC	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	3 cut(s)	507, 711, 1010
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	3 cut(s)	511, 628, 676
FaiI	YATR	6 cut(s)	509, 626, 674, 824, 887, 939
FaqI	GGGAC	3 cut(s)	302, 526, 986
FatI	CATG	3 cut(s)	507, 624, 672
FauI	CCCGC	3 cut(s)	138, 157, 369
FblI	GTMKAC	1 cut(s)	261
FokI	GGATG	2 cut(s)	380, 924
FriOI	GRGCYC	1 cut(s)	380
FspBI	CTAG	2 cut(s)	51, 1011
GlaI	GCGC	2 cut(s)	392, 451
GsaI	CCCAGC	2 cut(s)	418, 874
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	320, 413, 430, 620
HhaI	GCGC	2 cut(s)	393, 452
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	511, 628, 676
Hin6I	GCGC	2 cut(s)	391, 450
HinP1I	GCGC	2 cut(s)	391, 450
HindIII	AAGCTT	1 cut(s)	80
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	262, 552, 592
Hpy188III	TCNNGA	3 cut(s)	340, 443, 699
Hpy8I	GTNNAC	3 cut(s)	262, 552, 592
Hpy99I	CGWCG	2 cut(s)	449, 838
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	5 cut(s)	549, 589, 858, 894, 994
HpyCH4IV	ACGT	1 cut(s)	291
HpyF3I	CTNAG	4 cut(s)	216, 462, 807, 972
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	511, 628, 676
HspAI	GCGC	2 cut(s)	391, 450
KasI	GGCGCC	1 cut(s)	449
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
KspI	CCGCGG	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	55, 93, 540
LmnI	GCTCC	9 cut(s)	157, 198, 390, 721, 769, 814, 832, 838, 981
Lsp1109I	GCAGC	5 cut(s)	223, 232, 244, 697, 811
LweI	GCATC	2 cut(s)	402, 902
MaeI	CTAG	2 cut(s)	51, 1011
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	57, 95, 542
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	3 cut(s)	55, 93, 540
MboII	GAAGA	4 cut(s)	9, 12, 15, 431
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	3 cut(s)	121, 878, 919
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	3 cut(s)	337, 614, 964
MmeI	TCCRAC	2 cut(s)	608, 816
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	910
MspA1I	CMGCKG	3 cut(s)	409, 521, 562
MspR9I	CCNGG	1 cut(s)	427
MvnI	CGCG	3 cut(s)	341, 521, 596
NaeI	GCCGGC	1 cut(s)	318
NarI	GGCGCC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	3 cut(s)	55, 93, 540
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	511, 628, 676
NmeAIII	GCCGAG	2 cut(s)	596, 978
NruI	TCGCGA	1 cut(s)	341
PaeR7I	CTCGAG	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	2 cut(s)	450, 464
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	7 cut(s)	157, 241, 355, 659, 775, 781, 787
PinAI	ACCGGT	2 cut(s)	308, 333
PleI	GAGTC	3 cut(s)	337, 613, 963
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	3 cut(s)	337, 613, 963
Psp124BI	GAGCTC	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	414, 870
PspPI	GGNCC	7 cut(s)	319, 331, 412, 513, 549, 738, 1000
PspXI	VCTCGAGB	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	64, 304
PsuI	RGATCY	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	910
Rsr2I	CGGWCCG	1 cut(s)	331
RsrII	CGGWCCG	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	380
SacII	CCGCGG	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	55, 93, 540
Sau96I	GGNCC	7 cut(s)	319, 331, 412, 513, 549, 738, 1000
SchI	GAGTC	3 cut(s)	337, 614, 964
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	2 cut(s)	402, 902
SfoI	GGCGCC	1 cut(s)	451
Sfr274I	CTCGAG	1 cut(s)	379
Sfr303I	CCGCGG	1 cut(s)	522
SgrBI	CCGCGG	1 cut(s)	522
SinI	GGWCC	5 cut(s)	331, 513, 549, 738, 1000
SlaI	CTCGAG	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	3 cut(s)	121, 878, 919
SspDI	GGCGCC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	51, 1011
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	3 cut(s)	507, 711, 1010
TaaI	ACNGT	5 cut(s)	549, 589, 858, 894, 994
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	126, 380, 444
TaqII	GACCGA	1 cut(s)	918
TasI	AATT	3 cut(s)	121, 878, 919
TfiI	GAWTC	7 cut(s)	157, 241, 355, 659, 775, 781, 787
TscAI	CASTG	2 cut(s)	46, 897
TseI	GCWGC	5 cut(s)	211, 220, 232, 685, 799
TspDTI	ATGAA	1 cut(s)	689
TspRI	CASTG	2 cut(s)	46, 897
VpaK11BI	GGWCC	5 cut(s)	331, 513, 549, 738, 1000
XagI	CCTNNNNNAGG	1 cut(s)	625
XapI	RAATTY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1011
XhoI	CTCGAG	1 cut(s)	379
XmaJI	CCTAGG	1 cut(s)	1010
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	2 cut(s)	51, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.