Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Forward (+)

65658337 .. 65662545

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG488200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATAAGACCTCATCTTCTTCTACTGAAAACTCCACTGGTGCCACTAGGGATCAGTACCTGAAACACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCATAATCCGAAAACCCAATTTCGACCCGCCTCCTCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCACCAAAACCAAAACGCACCGCTTCAGCTCCAATCCTCTGCTTCGCAGCCTCAGCAACCCCCCCAGCAGCCGCCCAATCAGCACCAGCCTCCGGTCTACAACATCAACAAGAACGATTTCAGGGACGTGGTTCAGAAGCTGACTGGTTCGCCGGCCCACACGCCGGACCGGTTCGCGACTCCTCCGCCGATTCACCCGCCGAAAACACAAAGCTCGAGGCTCCAGCGCATCCGCCCTCCGCCGCTGGCCCAGCTCGCCTCTCGGCCGCCTTCTCTTCTGGACGGCGCCGTTTCGGCTCAGCCGAACAACACCAACACCAACAACAACAACCCTCTCATTCCGCCCATGGGAACCGCCGCTGCGCATTTCGGCGGCGTGATCGGACGGTCCACGGCGCCGCTGTCGCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTTCCTCAACAACCCGCTCTCCTCCGGCGATTCTAATCAGAACATGAACCAGAAGCAGCAGCATTTCTCTGGATTTTCTCCCTTGGCTCCACTCGTCTCGCCTCGCTGGACCAGCCTAACTCCACCGCCGCCGCAACCGGAGCAGAATCAGAATCAGAATCAGAGCCAGCAGCTTCCTCAGCCGGAGCAGGCTATGGCTCCCTCGTCGGAGCCTCCACAACCTCCACAGTTTGCTTCCTCCCGGCCCCAATTCGCTATGCCACCGTCGCCGCTTCCATTCGGATGCTTGAATTCGCCTCGGTCGCAGTATAATCTGCTTTCGCCGAGTCAGTTAGGGTTTCCTCAGCTCCCTCTGTCACCGACTGTGCCGGTTCCAAGCCCTAGGTGGAGGGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

344

Amino Acids

37.36

Weight (kDa)

10.35

Isoelectric Point (pI)

86.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	84 - 109	4.2e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	531
AccB1I	GGYRCC	3 cut(s)	41, 452, 562
AccBSI	CCGCTC	2 cut(s)	155, 652
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	2 cut(s)	344, 602
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	453, 563
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	5 cut(s)	259, 331, 515, 604, 633
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	925
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	7 cut(s)	79, 196, 307, 381, 421, 808, 982
AluI	AGCT	7 cut(s)	79, 196, 307, 381, 421, 808, 982
Alw26I	GTCTC	2 cut(s)	625, 736
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	2 cut(s)	61, 307
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	5 cut(s)	321, 414, 431, 624, 878
ApeKI	GCWGC	6 cut(s)	214, 235, 527, 691, 694, 805
ApoI	RAATTY	1 cut(s)	925
AsiGI	ACCGGT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	284
AspA2I	CCTAGG	1 cut(s)	1016
AspLEI	GCGC	4 cut(s)	396, 455, 532, 565
AspS9I	GGNCC	6 cut(s)	322, 334, 415, 555, 744, 879
AsuC2I	CCSGG	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	353, 984
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	3 cut(s)	334, 555, 744
AvrII	CCTAGG	1 cut(s)	1016
BanI	GGYRCC	3 cut(s)	41, 452, 562
BbvCI	CCTCAGC	3 cut(s)	219, 813, 978
BbvI	GCAGC	6 cut(s)	226, 247, 514, 703, 706, 817
BceAI	ACGGC	3 cut(s)	440, 466, 576
BcnI	CCSGG	1 cut(s)	877
BcoDI	GTCTC	2 cut(s)	625, 736
BfaI	CTAG	2 cut(s)	48, 1017
BfoI	RGCGCY	2 cut(s)	456, 566
BglI	GCCNNNNNGGC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	90
BlnI	CCTAGG	1 cut(s)	1016
BlpI	GCTNAGC	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	877
Bme18I	GGWCC	3 cut(s)	334, 555, 744
BmeT110I	CYCGRG	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	6 cut(s)	322, 334, 415, 555, 744, 879
BmrFI	CCNGG	1 cut(s)	877
BmsI	GCATC	2 cut(s)	405, 908
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	3 cut(s)	219, 813, 978
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	877
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	2 cut(s)	453, 563
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	5 cut(s)	513, 558, 717, 932, 1016
BsaWI	WCCGGW	3 cut(s)	259, 336, 772
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 638, 668
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 331, 515, 604, 633
Bse118I	RCCGGY	4 cut(s)	319, 336, 616, 1003
Bse1I	ACTGG	2 cut(s)	43, 316
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	5 cut(s)	513, 558, 717, 932, 1016
BseGI	GGATG	2 cut(s)	396, 923
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	5 cut(s)	259, 331, 515, 604, 633
BseMII	CTCAG	4 cut(s)	233, 479, 827, 992
BseNI	ACTGG	2 cut(s)	43, 316
BseRI	GAGGAG	6 cut(s)	123, 126, 129, 132, 339, 646
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	6 cut(s)	226, 247, 514, 703, 706, 817
BseYI	CCCAGC	2 cut(s)	231, 417
Bsh1236I	CGCG	2 cut(s)	344, 602
Bsh1285I	CGRYCG	3 cut(s)	434, 594, 938
BshFI	GGCC	5 cut(s)	323, 416, 433, 626, 880
BshNI	GGYRCC	3 cut(s)	41, 452, 562
BshTI	ACCGGT	1 cut(s)	336
BsiEI	CGRYCG	3 cut(s)	434, 594, 938
BsiHKCI	CYCGRG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	5 cut(s)	259, 331, 515, 604, 633
BsmAI	GTCTC	2 cut(s)	625, 736
BsmBI	CGTCTC	1 cut(s)	736
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	5 cut(s)	323, 416, 433, 626, 880
Bso31I	GGTCTC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	52, 90, 546
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	513
Bsp68I	TCGCGA	1 cut(s)	344
BspANI	GGCC	5 cut(s)	323, 416, 433, 626, 880
BspCNI	CTCAG	4 cut(s)	232, 478, 826, 991
BspFNI	CGCG	2 cut(s)	344, 602
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	3 cut(s)	41, 452, 562
BspTNI	GGTCTC	1 cut(s)	625
BsrBI	CCGCTC	2 cut(s)	155, 652
BsrFI	RCCGGY	4 cut(s)	319, 336, 616, 1003
BsrI	ACTGG	2 cut(s)	43, 316
BssAI	RCCGGY	4 cut(s)	319, 336, 616, 1003
BssECI	CCNNGG	5 cut(s)	513, 558, 717, 932, 1016
BssMI	GATC	3 cut(s)	52, 90, 546
BssNI	GRCGYC	2 cut(s)	453, 563
BssT1I	CCWWGG	3 cut(s)	513, 717, 1016
Bst4CI	ACNGT	5 cut(s)	555, 595, 864, 900, 1000
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	2 cut(s)	453, 563
BstC8I	GCNNGC	5 cut(s)	321, 414, 423, 803, 825
BstDEI	CTNAG	4 cut(s)	219, 465, 813, 978
BstDSI	CCRYGG	2 cut(s)	513, 558
BstENI	CCTNNNNNAGG	1 cut(s)	631
BstF5I	GGATG	2 cut(s)	396, 923
BstFNI	CGCG	2 cut(s)	344, 602
BstH2I	RGCGCY	2 cut(s)	456, 566
BstHHI	GCGC	4 cut(s)	396, 455, 532, 565
BstKTI	GATC	3 cut(s)	55, 93, 549
BstMAI	GTCTC	2 cut(s)	625, 736
BstMBI	GATC	3 cut(s)	52, 90, 546
BstMCI	CGRYCG	3 cut(s)	434, 594, 938
BstSCI	CCNGG	1 cut(s)	875
BstUI	CGCG	2 cut(s)	344, 602
BstV1I	GCAGC	6 cut(s)	226, 247, 514, 703, 706, 817
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BstZI	CGGCCG	1 cut(s)	431
BsuRI	GGCC	5 cut(s)	323, 416, 433, 626, 880
BtgI	CCRYGG	2 cut(s)	513, 558
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	396, 923
BtsIMutI	CAGTG	1 cut(s)	36
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	5 cut(s)	321, 414, 423, 803, 825
CaiI	CAGNNNCTG	2 cut(s)	61, 307
CfoI	GCGC	4 cut(s)	396, 455, 532, 565
Cfr10I	RCCGGY	4 cut(s)	319, 336, 616, 1003
Cfr13I	GGNCC	6 cut(s)	322, 334, 415, 555, 744, 879
CpoI	CGGWCCG	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	336
CspI	CGGWCCG	1 cut(s)	334
CviAII	CATG	3 cut(s)	514, 631, 679
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	219, 465, 813, 978
DinI	GGCGCC	2 cut(s)	454, 564
DpnI	GATC	3 cut(s)	54, 92, 548
DpnII	GATC	3 cut(s)	52, 90, 546
EaeI	YGGCCR	1 cut(s)	431
EagI	CGGCCG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	6 cut(s)	135, 342, 389, 396, 498, 623
EclXI	CGGCCG	1 cut(s)	431
Eco130I	CCWWGG	3 cut(s)	513, 717, 1016
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	3 cut(s)	334, 555, 744
Eco52I	CGGCCG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	925
EcoT14I	CCWWGG	3 cut(s)	513, 717, 1016
EgeI	GGCGCC	2 cut(s)	454, 564
EheI	GGCGCC	2 cut(s)	454, 564
ErhI	CCWWGG	3 cut(s)	513, 717, 1016
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	3 cut(s)	517, 634, 682
FaiI	YATR	7 cut(s)	104, 515, 632, 680, 830, 893, 945
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	513, 630, 678
FauI	CCCGC	4 cut(s)	135, 160, 372, 657
FblI	GTMKAC	1 cut(s)	264
FokI	GGATG	2 cut(s)	383, 930
FspBI	CTAG	2 cut(s)	48, 1017
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	4 cut(s)	395, 454, 531, 564
GsaI	CCCAGC	2 cut(s)	235, 421
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	2 cut(s)	456, 566
HaeIII	GGCC	5 cut(s)	323, 416, 433, 626, 880
HhaI	GCGC	4 cut(s)	396, 455, 532, 565
Hin1I	GRCGYC	2 cut(s)	453, 563
Hin1II	CATG	3 cut(s)	517, 634, 682
Hin6I	GCGC	4 cut(s)	394, 453, 530, 563
HinP1I	GCGC	4 cut(s)	394, 453, 530, 563
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	9 cut(s)	160, 346, 358, 611, 665, 781, 787, 793, 961
HphI	GGTGA	2 cut(s)	353, 984
Hpy166II	GTNNAC	3 cut(s)	265, 558, 598
Hpy188III	TCNNGA	3 cut(s)	343, 446, 705
Hpy8I	GTNNAC	3 cut(s)	265, 558, 598
Hpy99I	CGWCG	2 cut(s)	844, 904
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	5 cut(s)	555, 595, 864, 900, 1000
HpyCH4IV	ACGT	1 cut(s)	294
HpyF3I	CTNAG	4 cut(s)	219, 465, 813, 978
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	2 cut(s)	453, 563
Hsp92II	CATG	3 cut(s)	517, 634, 682
HspAI	GCGC	4 cut(s)	394, 453, 530, 563
KasI	GGCGCC	2 cut(s)	452, 562
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	52, 90, 546
LmnI	GCTCC	9 cut(s)	160, 201, 393, 727, 775, 820, 838, 844, 987
Lsp1109I	GCAGC	6 cut(s)	226, 247, 514, 703, 706, 817
LweI	GCATC	2 cut(s)	405, 908
MaeI	CTAG	2 cut(s)	48, 1017
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	990
MalI	GATC	3 cut(s)	54, 92, 548
MbiI	CCGCTC	2 cut(s)	155, 652
MboI	GATC	3 cut(s)	52, 90, 546
MboII	GAAGA	3 cut(s)	9, 12, 434
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	3 cut(s)	118, 884, 925
Mly113I	GGCGCC	2 cut(s)	453, 563
MlyI	GAGTC	3 cut(s)	340, 620, 970
MmeI	TCCRAC	2 cut(s)	614, 822
MroNI	GCCGGC	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	916
MspA1I	CMGCKG	3 cut(s)	412, 527, 568
MspR9I	CCNGG	1 cut(s)	877
MvnI	CGCG	2 cut(s)	344, 602
NaeI	GCCGGC	1 cut(s)	321
NarI	GGCGCC	2 cut(s)	453, 563
NciI	CCSGG	1 cut(s)	877
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	3 cut(s)	52, 90, 546
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	517, 634, 682
NmeAIII	GCCGAG	3 cut(s)	409, 602, 984
NmuCI	GTSAC	1 cut(s)	990
NruI	TCGCGA	1 cut(s)	344
NsbI	TGCGCA	1 cut(s)	531
PaeR7I	CTCGAG	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	6 cut(s)	160, 358, 665, 781, 787, 793
PinAI	ACCGGT	1 cut(s)	336
PleI	GAGTC	3 cut(s)	340, 619, 969
PluTI	GGCGCC	2 cut(s)	456, 566
PpsI	GAGTC	3 cut(s)	340, 619, 969
PspFI	CCCAGC	2 cut(s)	231, 417
PspPI	GGNCC	6 cut(s)	322, 334, 415, 555, 744, 879
PspXI	VCTCGAGB	1 cut(s)	382
PstNI	CAGNNNCTG	2 cut(s)	61, 307
PsuI	RGATCY	1 cut(s)	90
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	916
Rsr2I	CGGWCCG	1 cut(s)	334
RsrII	CGGWCCG	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	52, 90, 546
Sau96I	GGNCC	6 cut(s)	322, 334, 415, 555, 744, 879
SchI	GAGTC	3 cut(s)	340, 620, 970
ScrFI	CCNGG	1 cut(s)	877
SfaNI	GCATC	2 cut(s)	405, 908
SfoI	GGCGCC	2 cut(s)	454, 564
Sfr274I	CTCGAG	1 cut(s)	382
SinI	GGWCC	3 cut(s)	334, 555, 744
SlaI	CTCGAG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	916
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	3 cut(s)	118, 884, 925
SspDI	GGCGCC	2 cut(s)	452, 562
SspMI	CTAG	2 cut(s)	48, 1017
StyD4I	CCNGG	1 cut(s)	875
StyI	CCWWGG	3 cut(s)	513, 717, 1016
TaaI	ACNGT	5 cut(s)	555, 595, 864, 900, 1000
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	123, 383
TaqII	GACCGA	1 cut(s)	924
TasI	AATT	3 cut(s)	118, 884, 925
TfiI	GAWTC	6 cut(s)	160, 358, 665, 781, 787, 793
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	990
TseI	GCWGC	6 cut(s)	214, 235, 527, 691, 694, 805
Tsp45I	GTSAC	1 cut(s)	990
TspDTI	ATGAA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	334, 555, 744
XagI	CCTNNNNNAGG	1 cut(s)	631
XapI	RAATTY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	382
XmaJI	CCTAGG	1 cut(s)	1016
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	48, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.