Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

23598018 .. 23601086

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1187500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATAAAAGCTGTCCCTCTTCAACTACTGATTCAGCTGCTCACACTACTGCCGCTTCCAGTGGTAGTGGCGGTGGCGGAGGAAGCTTCAACACGACCACCACCAGGGACAATTACCTCAAACACCTCAACAAGCTCTCCCACAAGATCTCAAAACCCACCACCACCAACACCCAAAACACCTTCCTCAAAAAACCCAACTTTGAAAACCCACCGCCTCCTCCTCCTCCTCCACTTCCTCTTCCTCCCCAACAGCAGCAGCACCAGCCGCCGGTCTACAACATCAACAAAAATGACTTCCGCGACGTCGTTCAGAAGCTCACCGGCTCTCCCGCCCACGACCGCTTCTCTAACCCGCCGCCGCCCGTCCACCAGCCCAAGCCCCAGATCAGCTCTCGCCTCCAGCGCATCCGCCCTCCCCCCCTCGCTCAGGTTAACAACCGCCCCCCTCCCTCGCTAGAATGCGCCGCTCCACCCCCAAACGCCAGCAATCCAATCATCCCACCCATGGGATCCGCCGCCGCTCACTTCAACTCCATCGGACGGTCCACAACCCCTCTCTCTCCCCTCCCTCCTTTCCCAACCGTACACGGAGCGGCTGAATCCCCCGTCTCAGCCTACATGCGGTACCTCCACAACTCAATCTCAGCCGTCGATTCTAACAACCAGAAGTTCTCGGGATTCTCGCCGCTGGCCCCACTTGTCTCGCCGCGCTGGACCAATCTGACGCCGTCTCCGCGGCAGAATCAGCAGGTTGCGCATCCGCTGCAGGGGATAGGTACATCAGCGAATCAACAACCGCAGACAACGACGGCGACAGCTTCACAGCCACAGTTCGCTATGCCTCCGTCGCCGCTTCCATTCGGGTGCTTGAATTCGCCGCGATCCACGTACCCATTGCTTTCCCCAAATCAATTAGGGTTTCCTCAGCTGCCGCTCTCGCCCACAGTGCCTGCACCAAGCCCTAGGTGGAGAAGTTCAATGAACAAGTGTTTTTTTGGCAGACAACGTTGCGGCGGTGCTCCTTTCCCGCCCCATGGAGTGCATTGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

352

Amino Acids

37.69

Weight (kDa)

10.27

Isoelectric Point (pI)

74.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	88 - 114	2.3e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
Acc16I	TGCGCA	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	742
Acc65I	GGTACC	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	627
AccBSI	CCGCTC	4 cut(s)	470, 524, 596, 937
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	4 cut(s)	303, 712, 739, 883
AclI	AACGTT	1 cut(s)	1009
AclWI	GGATC	3 cut(s)	507, 520, 879
AcsI	RAATTY	1 cut(s)	874
AcyI	GRCGYC	2 cut(s)	306, 728
AfaI	GTAC	4 cut(s)	588, 629, 781, 893
AfiI	CCNNNNNNNGG	9 cut(s)	105, 271, 430, 508, 509, 543, 624, 770, 1037
AgsI	TTSAA	6 cut(s)	24, 91, 206, 532, 874, 981
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	12, 38, 87, 136, 319, 393, 821, 931
AluI	AGCT	8 cut(s)	12, 38, 87, 136, 319, 393, 821, 931
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	3 cut(s)	616, 709, 738
AlwI	GGATC	3 cut(s)	507, 520, 879
AlwNI	CAGNNNCTG	1 cut(s)	953
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	5 cut(s)	38, 256, 259, 766, 931
ApoI	RAATTY	1 cut(s)	874
Asp718I	GGTACC	1 cut(s)	627
AspA2I	CCTAGG	1 cut(s)	965
AspLEI	GCGC	4 cut(s)	408, 467, 714, 760
AspS9I	GGNCC	3 cut(s)	546, 694, 717
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	2 cut(s)	546, 717
AvrII	CCTAGG	1 cut(s)	965
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	1024
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	5 cut(s)	25, 268, 271, 753, 918
BccI	CCATC	1 cut(s)	545
BceAI	ACGGC	3 cut(s)	635, 715, 828
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	616, 709, 738
BfaI	CTAG	3 cut(s)	458, 966, 1054
BfmI	CTRYAG	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	742
BglII	AGATCT	1 cut(s)	147
BlnI	CCTAGG	1 cut(s)	965
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	2 cut(s)	546, 717
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	3 cut(s)	546, 694, 717
BmiI	GGNNCC	3 cut(s)	514, 629, 696
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	417, 769
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	2 cut(s)	429, 927
BsaAI	YACGTR	1 cut(s)	891
BsaHI	GRCGYC	2 cut(s)	306, 728
BsaJI	CCNNGG	5 cut(s)	105, 507, 737, 965, 1036
BsaXI	ACNNNNNCTCC	8 cut(s)	122, 152, 313, 343, 518, 548, 718, 748
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 271, 430, 508, 509, 543, 624, 770, 1037
Bse118I	RCCGGY	2 cut(s)	271, 323
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	896
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	5 cut(s)	105, 507, 737, 965, 1036
BseGI	GGATG	3 cut(s)	408, 498, 760
BseLI	CCNNNNNNNGG	9 cut(s)	105, 271, 430, 508, 509, 543, 624, 770, 1037
BseMI	GCAATG	1 cut(s)	896
BseMII	CTCAG	4 cut(s)	443, 627, 660, 941
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	4 cut(s)	210, 213, 216, 219
BseXI	GCAGC	5 cut(s)	25, 268, 271, 753, 918
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	4 cut(s)	303, 712, 739, 883
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	695
BshNI	GGYRCC	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	272, 324
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	9 cut(s)	105, 271, 430, 508, 509, 543, 624, 770, 1037
BsmAI	GTCTC	3 cut(s)	616, 709, 738
BsmBI	CGTCTC	2 cut(s)	616, 738
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp143I	GATC	4 cut(s)	147, 387, 512, 884
Bsp19I	CCATGG	2 cut(s)	507, 1036
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	4 cut(s)	442, 626, 659, 940
BspFNI	CGCG	4 cut(s)	303, 712, 739, 883
BspLI	GGNNCC	3 cut(s)	514, 629, 696
BspMAI	CTGCAG	1 cut(s)	771
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	3 cut(s)	507, 520, 879
BspT107I	GGYRCC	1 cut(s)	627
BsrBI	CCGCTC	4 cut(s)	470, 524, 596, 937
BsrDI	GCAATG	1 cut(s)	896
BsrFI	RCCGGY	2 cut(s)	271, 323
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	2 cut(s)	271, 323
BssECI	CCNNGG	5 cut(s)	105, 507, 737, 965, 1036
BssMI	GATC	4 cut(s)	147, 387, 512, 884
BssNI	GRCGYC	2 cut(s)	306, 728
BssT1I	CCWWGG	3 cut(s)	507, 965, 1036
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	4 cut(s)	546, 586, 834, 949
Bst6I	CTCTTC	2 cut(s)	25, 246
BstACI	GRCGYC	2 cut(s)	306, 728
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	891
BstC8I	GCNNGC	3 cut(s)	487, 693, 954
BstDEI	CTNAG	4 cut(s)	429, 613, 646, 927
BstDSI	CCRYGG	3 cut(s)	507, 737, 1036
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	3 cut(s)	408, 498, 760
BstFNI	CGCG	4 cut(s)	303, 712, 739, 883
BstHHI	GCGC	4 cut(s)	408, 467, 714, 760
BstKTI	GATC	4 cut(s)	150, 390, 515, 887
BstMAI	GTCTC	3 cut(s)	616, 709, 738
BstMBI	GATC	4 cut(s)	147, 387, 512, 884
BstMCI	CGRYCG	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	767
BstUI	CGCG	4 cut(s)	303, 712, 739, 883
BstV1I	GCAGC	5 cut(s)	25, 268, 271, 753, 918
BstX2I	RGATCY	2 cut(s)	147, 512
BstYI	RGATCY	2 cut(s)	147, 512
BsuRI	GGCC	1 cut(s)	695
BtgI	CCRYGG	3 cut(s)	507, 737, 1036
BtsCI	GGATG	3 cut(s)	408, 498, 760
BtsIMutI	CAGTG	2 cut(s)	67, 954
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	3 cut(s)	487, 693, 954
CaiI	CAGNNNCTG	1 cut(s)	953
CfoI	GCGC	4 cut(s)	408, 467, 714, 760
Cfr10I	RCCGGY	2 cut(s)	271, 323
Cfr13I	GGNCC	3 cut(s)	546, 694, 717
Cfr42I	CCGCGG	1 cut(s)	740
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	4 cut(s)	587, 628, 780, 892
CviAII	CATG	3 cut(s)	508, 622, 1037
CviQI	GTAC	4 cut(s)	587, 628, 780, 892
DdeI	CTNAG	4 cut(s)	429, 613, 646, 927
DpnI	GATC	4 cut(s)	149, 389, 514, 886
DpnII	GATC	4 cut(s)	147, 387, 512, 884
Eam1104I	CTCTTC	2 cut(s)	25, 246
EarI	CTCTTC	2 cut(s)	25, 246
EciI	GGCGGA	3 cut(s)	93, 401, 505
Eco130I	CCWWGG	3 cut(s)	507, 965, 1036
Eco47I	GGWCC	2 cut(s)	546, 717
Eco88I	CYCGRG	1 cut(s)	676
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	3 cut(s)	507, 965, 1036
ErhI	CCWWGG	3 cut(s)	507, 965, 1036
Esp3I	CGTCTC	2 cut(s)	616, 738
FaeI	CATG	3 cut(s)	511, 625, 1040
FaiI	YATR	4 cut(s)	509, 623, 842, 1038
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	507, 621, 1036
FauI	CCCGC	3 cut(s)	340, 363, 1038
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	3 cut(s)	395, 485, 747
FspBI	CTAG	3 cut(s)	458, 966, 1054
FspI	TGCGCA	1 cut(s)	759
GlaI	GCGC	4 cut(s)	407, 466, 713, 759
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	695
HapII	CCGG	2 cut(s)	272, 324
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	4 cut(s)	408, 467, 714, 760
Hin1I	GRCGYC	2 cut(s)	306, 728
Hin1II	CATG	3 cut(s)	511, 625, 1040
Hin6I	GCGC	4 cut(s)	406, 465, 712, 758
HinP1I	GCGC	4 cut(s)	406, 465, 712, 758
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	6 cut(s)	32, 602, 656, 681, 745, 790
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	272, 324
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	5 cut(s)	277, 370, 436, 549, 589
Hpy188I	TCNGA	3 cut(s)	315, 542, 726
Hpy188III	TCNNGA	1 cut(s)	678
Hpy8I	GTNNAC	5 cut(s)	277, 370, 436, 549, 589
Hpy99I	CGWCG	5 cut(s)	308, 311, 656, 814, 853
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	4 cut(s)	546, 586, 834, 949
HpyCH4IV	ACGT	3 cut(s)	306, 890, 1009
HpyCH4V	TGCA	3 cut(s)	769, 956, 1045
HpyF3I	CTNAG	4 cut(s)	429, 613, 646, 927
HpySE526I	ACGT	3 cut(s)	306, 890, 1009
Hsp92I	GRCGYC	2 cut(s)	306, 728
Hsp92II	CATG	3 cut(s)	511, 625, 1040
HspAI	GCGC	4 cut(s)	406, 465, 712, 758
KpnI	GGTACC	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	436
KspI	CCGCGG	1 cut(s)	740
Kzo9I	GATC	4 cut(s)	147, 387, 512, 884
LmnI	GCTCC	3 cut(s)	475, 593, 1027
Lsp1109I	GCAGC	5 cut(s)	25, 268, 271, 753, 918
LweI	GCATC	2 cut(s)	417, 769
MaeI	CTAG	3 cut(s)	458, 966, 1054
MaeII	ACGT	3 cut(s)	306, 890, 1009
MalI	GATC	4 cut(s)	149, 389, 514, 886
MbiI	CCGCTC	4 cut(s)	470, 524, 596, 937
MboI	GATC	4 cut(s)	147, 387, 512, 884
MboII	GAAGA	2 cut(s)	12, 233
MflI	RGATCY	2 cut(s)	147, 512
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	3 cut(s)	112, 874, 914
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	865
MspA1I	CMGCKG	5 cut(s)	38, 691, 739, 766, 931
MspI	CCGG	2 cut(s)	272, 324
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	4 cut(s)	303, 712, 739, 883
NcoI	CCATGG	2 cut(s)	507, 1036
NdeII	GATC	4 cut(s)	147, 387, 512, 884
NlaIII	CATG	3 cut(s)	511, 625, 1040
NlaIV	GGNNCC	3 cut(s)	514, 629, 696
NsbI	TGCGCA	1 cut(s)	759
NspI	RCATGY	1 cut(s)	625
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	6 cut(s)	32, 602, 656, 681, 745, 790
PflFI	GACNNNGTC	1 cut(s)	730
Ppu21I	YACGTR	1 cut(s)	891
Psp1406I	AACGTT	1 cut(s)	1009
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	514, 629, 696
PspPI	GGNCC	3 cut(s)	546, 694, 717
PstI	CTGCAG	1 cut(s)	771
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	147, 512
PsyI	GACNNNGTC	1 cut(s)	730
PvuII	CAGCTG	2 cut(s)	38, 931
RsaI	GTAC	4 cut(s)	588, 629, 781, 893
RsaNI	GTAC	4 cut(s)	587, 628, 780, 892
RseI	CAYNNNNRTG	1 cut(s)	865
SacII	CCGCGG	1 cut(s)	740
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	147, 387, 512, 884
Sau96I	GGNCC	3 cut(s)	546, 694, 717
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	2 cut(s)	417, 769
SfcI	CTRYAG	1 cut(s)	767
Sfr303I	CCGCGG	1 cut(s)	740
SgrBI	CCGCGG	1 cut(s)	740
SinI	GGWCC	2 cut(s)	546, 717
SmiMI	CAYNNNNRTG	1 cut(s)	865
Sse9I	AATT	3 cut(s)	112, 874, 914
SspMI	CTAG	3 cut(s)	458, 966, 1054
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	3 cut(s)	507, 965, 1036
TaaI	ACNGT	4 cut(s)	546, 586, 834, 949
TaiI	ACGT	3 cut(s)	309, 893, 1012
TaqI	TCGA	1 cut(s)	654
TasI	AATT	3 cut(s)	112, 874, 914
TfiI	GAWTC	6 cut(s)	32, 602, 656, 681, 745, 790
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	67, 954
TseI	GCWGC	5 cut(s)	38, 256, 259, 766, 931
TspDTI	ATGAA	1 cut(s)	998
TspGWI	ACGGA	2 cut(s)	606, 837
TspRI	CASTG	2 cut(s)	67, 954
Tth111I	GACNNNGTC	1 cut(s)	730
VpaK11BI	GGWCC	2 cut(s)	546, 717
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	966
XmaJI	CCTAGG	1 cut(s)	965
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	3 cut(s)	458, 966, 1054
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.