AT1G79050

DNA repair protein recA

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29736959 .. 29740179
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79050.2

Sequence Viewer

Length: 1320 bp
ATGGATTCACAGCTAGTCTTGTCTCTGAAGCTGAATCCAAGCTTCACTCCTCTTTCTCCTCTCTTCCCTTTCACTCCATGTTCTTCTTTTTCGCCGTCGCTCCGGTTTTCTTCTTGCTACTCCCGCCGCCTCTATTCTCCGGTTACCGTCTACGCCGCGAAGAAACTCTCCCACAAAATCAGTTCTGAATTCGATGACAGAATCAACGGCGCTCTCTCTCCCGACGCTGATTCCCGCTTCCTCGACCGCCAAAAGGCTTTAGAGGCAGCTATGAATGACATTAACAGTTCATTTGGTAAAGGAAGTGTAACAAGATTGGGGAGTGCTGGTGGAGCATTAGTGGAGACCTTTTCGAGTGGTATTTTGACTCTTGATCTTGCTTTAGGTGGAGGCCTACCAAAGGGTCGGGTAGTCGAAATATATGGACCAGAAAGTAGTGGCAAGACCACGCTAGCACTCCATGCTATTGCTGAAGTGCAGAAGCTTGGAGGCAATGCAATGCTTGTTGATGCAGAGCATGCCTTTGATCCAGCGTATTCTAAAGCATTAGGTGTTGATGTAGAAAATTTGATAGTGTGCCAGCCAGATAATGGCGAGATGGCTTTAGAAACTGCAGACCGTATGTGTCGCTCAGGTGCGGTTGACCTTATATGTGTTGATTCTGTTTCAGCACTTACTCCACGAGCTGAGATTGAAGGTGAGATTGGAATGCAGCAAATGGGTTTGCAAGCTCGTCTTATGAGTCAAGCTCTTCGTAAAATGTCAGGAAACGCCTCTAAAGCTGGGTGTACTCTTATTTTCCTAAACCAAATAAGATACAAGATTGGTGTGTACTATGGGAATCCAGAGGTGACTAGCGGAGGAATTGCGTTAAAGTTCTTCGCGTCGGTCCGTCTAGAAATTCGTTCTGCTGGGAAGATCAAATCTAGCAAAGGGGATGAAGATATTGGTCTTCGGGCTCGTGTAAGAGTGCAGAAGAGCAAGGTTTCAAGACCGTATAAGCAAGCAGAGTTTGAGATTATGTTTGGGGAAGGAGTCAGTAAACTGGGATGCGTTCTTGATTGTGCTGAAATTATGGAAGTTGTGGTCAAGAAAGGTTCCTGGTACAGCTACGAAGACCAAAGGCTCGGGCAAGGAAGAGAGAAAGCACTGCAGCACTTAAGGGAAAACCCTGCTCTTCAAGACGAAATTGAGAAGAAAGTGAGATTGTTGATGTTAGATGGAGAAGTTCATCGATCAACTCCTTTGATGAGCAGCAGCTCTTCCTCGGCTTCACATCGCGAAGAAGAAGAAGAAGACTCGCTTGACGATTTCCAATGA

Protein Analysis

439

Amino Acids

47.73

Weight (kDa)

6.0

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecA_N PF00154 85 - 337 6.5e-109 RecA N-terminal domain
Rad51 PF08423 117 - 303 1.6e-06 Rad51
ATPase PF06745 118 - 190 4.7e-07 KaiC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 1 cut(s) 150
AccII CGCG 3 cut(s) 158, 884, 1281
AciI CCGC 7 cut(s) 124, 127, 156, 235, 247, 638, 858
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 3 cut(s) 188, 565, 900
AcuI CTGAAG 2 cut(s) 47, 492
AfaI GTAC 3 cut(s) 790, 833, 1106
AfiI CCNNNNNNNGG 3 cut(s) 253, 400, 590
AflII CTTAAG 1 cut(s) 1159
AgsI TTSAA 3 cut(s) 695, 990, 1181
AjnI CCWGG 1 cut(s) 1100
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
Alw26I GTCTC 2 cut(s) 27, 338
AlwI GGATC 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 1127
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 5 cut(s) 266, 712, 1153, 1254, 1257
ApoI RAATTY 3 cut(s) 188, 565, 900
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 425, 889
AsuHPI GGTGA 2 cut(s) 710, 862
AsuNHI GCTAGC 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 1127
AvaII GGWCC 2 cut(s) 425, 889
BanII GRGCYC 1 cut(s) 961
BauI CACGAG 2 cut(s) 681, 960
BbsI GAAGAC 3 cut(s) 944, 1122, 1302
BbvI GCAGC 5 cut(s) 278, 724, 1165, 1266, 1269
BccI CCATC 2 cut(s) 592, 1214
BceAI ACGGC 2 cut(s) 79, 223
BciT130I CCWGG 1 cut(s) 1102
BcoDI GTCTC 2 cut(s) 27, 338
BfaI CTAG 5 cut(s) 14, 452, 855, 896, 927
BfmI CTRYAG 2 cut(s) 612, 1151
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 1159
BisI GCNGC 7 cut(s) 127, 156, 267, 713, 1154, 1255, 1258
BlsI GCNGC 7 cut(s) 128, 157, 268, 714, 1155, 1256, 1259
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 2 cut(s) 425, 889
BmeT110I CYCGRG 1 cut(s) 1127
BmgT120I GGNCC 2 cut(s) 425, 889
BmiI GGNNCC 1 cut(s) 1099
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 1 cut(s) 1055
BmsI GCATC 2 cut(s) 499, 1040
BmtI GCTAGC 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 1055
BpiI GAAGAC 3 cut(s) 944, 1122, 1302
BplI GAGNNNNNCTC 2 cut(s) 733, 765
Bpu10I CCTNAGC 1 cut(s) 631
Bsa29I ATCGAT 1 cut(s) 1234
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 1266
BsaWI WCCGGW 2 cut(s) 102, 139
BsaXI ACNNNNNCTCC 4 cut(s) 313, 324, 343, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 400, 590
Bse1I ACTGG 1 cut(s) 1050
Bse3DI GCAATG 2 cut(s) 499, 504
BseBI CCWGG 1 cut(s) 1102
BseCI ATCGAT 1 cut(s) 1234
BseDI CCNNGG 1 cut(s) 1266
BseGI GGATG 2 cut(s) 943, 1055
BseLI CCNNNNNNNGG 3 cut(s) 253, 400, 590
BseMI GCAATG 2 cut(s) 499, 504
BseMII CTCAG 2 cut(s) 645, 678
BseNI ACTGG 1 cut(s) 1050
BseRI GAGGAG 2 cut(s) 39, 48
BseXI GCAGC 5 cut(s) 278, 724, 1165, 1266, 1269
BseYI CCCAGC 2 cut(s) 782, 911
BsgI GTGCAG 2 cut(s) 497, 992
Bsh1236I CGCG 3 cut(s) 158, 884, 1281
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 1234
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 1127
BsiSI CCGG 2 cut(s) 103, 140
BslI CCNNNNNNNGG 3 cut(s) 253, 400, 590
BsmAI GTCTC 2 cut(s) 27, 338
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 1127
Bsp1286I GDGCHC 1 cut(s) 961
Bsp143I GATC 4 cut(s) 373, 526, 918, 1235
Bsp68I TCGCGA 1 cut(s) 1281
BspACI CCGC 7 cut(s) 124, 127, 156, 235, 247, 638, 858
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 644, 679
BspDI ATCGAT 1 cut(s) 1234
BspFNI CGCG 3 cut(s) 158, 884, 1281
BspLI GGNNCC 1 cut(s) 1099
BspMAI CTGCAG 2 cut(s) 616, 1155
BspOI GCTAGC 1 cut(s) 455
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 4 cut(s) 756, 971, 1182, 1267
BspTI CTTAAG 1 cut(s) 1159
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 499, 504
BsrI ACTGG 1 cut(s) 1050
BssECI CCNNGG 1 cut(s) 1266
BssMI GATC 4 cut(s) 373, 526, 918, 1235
BssSI CACGAG 2 cut(s) 681, 960
Bst2BI CACGAG 2 cut(s) 681, 960
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 4 cut(s) 148, 287, 620, 996
Bst6I CTCTTC 6 cut(s) 68, 756, 971, 1132, 1182, 1267
BstAFI CTTAAG 1 cut(s) 1159
BstAPI GCANNNNNTGC 2 cut(s) 461, 518
BstC8I GCNNGC 5 cut(s) 453, 519, 581, 729, 1005
BstDEI CTNAG 2 cut(s) 631, 687
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 943, 1055
BstFNI CGCG 3 cut(s) 158, 884, 1281
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 4 cut(s) 376, 529, 921, 1238
BstMAI GTCTC 2 cut(s) 27, 338
BstMBI GATC 4 cut(s) 373, 526, 918, 1235
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 6 cut(s) 123, 263, 332, 461, 518, 779
BstNI CCWGG 1 cut(s) 1102
BstNSI RCATGY 1 cut(s) 521
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 1100
BstSFI CTRYAG 2 cut(s) 612, 1151
BstUI CGCG 3 cut(s) 158, 884, 1281
BstV1I GCAGC 5 cut(s) 278, 724, 1165, 1266, 1269
BstV2I GAAGAC 3 cut(s) 944, 1122, 1302
Bsu15I ATCGAT 1 cut(s) 1234
BsuRI GGCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 1234
BtgZI GCGATG 1 cut(s) 1262
BtsCI GGATG 2 cut(s) 943, 1055
BtsI GCAGTG 1 cut(s) 1148
BtsIMutI CAGTG 1 cut(s) 1148
BtuMI TCGCGA 1 cut(s) 1281
Cac8I GCNNGC 5 cut(s) 453, 519, 581, 729, 1005
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 425, 889
ClaI ATCGAT 1 cut(s) 1234
CpoI CGGWCCG 1 cut(s) 889
CseI GACGC 2 cut(s) 233, 873
Csp6I GTAC 3 cut(s) 789, 832, 1105
CspI CGGWCCG 1 cut(s) 889
CviAII CATG 3 cut(s) 78, 461, 518
CviQI GTAC 3 cut(s) 789, 832, 1105
DdeI CTNAG 2 cut(s) 631, 687
DpnI GATC 4 cut(s) 375, 528, 920, 1237
DpnII GATC 4 cut(s) 373, 526, 918, 1235
Eam1104I CTCTTC 6 cut(s) 68, 756, 971, 1132, 1182, 1267
EarI CTCTTC 6 cut(s) 68, 756, 971, 1132, 1182, 1267
Eco147I AGGCCT 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 961
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 2 cut(s) 425, 889
Eco57I CTGAAG 2 cut(s) 47, 492
Eco88I CYCGRG 1 cut(s) 1127
Eco91I GGTNACC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 1100
EcoT38I GRGCYC 1 cut(s) 961
FaeI CATG 3 cut(s) 81, 464, 521
FalI AAGNNNNNCTT 4 cut(s) 720, 752, 1287, 1319
FatI CATG 3 cut(s) 77, 460, 517
FauI CCCGC 2 cut(s) 131, 242
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 7 cut(s) 127, 156, 267, 713, 1154, 1255, 1258
FokI GGATG 2 cut(s) 950, 1062
FriOI GRGCYC 1 cut(s) 961
Fsp4HI GCNGC 7 cut(s) 127, 156, 267, 713, 1154, 1255, 1258
FspBI CTAG 5 cut(s) 14, 452, 855, 896, 927
GlaI GCGC 1 cut(s) 211
GluI GCNGC 7 cut(s) 127, 156, 267, 713, 1154, 1255, 1258
GsaI CCCAGC 2 cut(s) 786, 915
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 103, 140
HgaI GACGC 2 cut(s) 233, 873
HhaI GCGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 81, 464, 521
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 2 cut(s) 40, 482
HpaII CCGG 2 cut(s) 103, 140
HphI GGTGA 2 cut(s) 710, 862
Hpy166II GTNNAC 5 cut(s) 151, 643, 789, 832, 1043
Hpy188I TCNGA 2 cut(s) 27, 187
Hpy8I GTNNAC 5 cut(s) 151, 643, 789, 832, 1043
Hpy99I CGWCG 3 cut(s) 100, 227, 889
HpyAV CCTTC 2 cut(s) 689, 1025
HpyCH4III ACNGT 4 cut(s) 148, 287, 620, 996
HpyCH4V TGCA 8 cut(s) 478, 497, 512, 614, 712, 727, 973, 1153
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 263, 332, 461, 518, 779
HpyF3I CTNAG 2 cut(s) 631, 687
Hsp92II CATG 3 cut(s) 81, 464, 521
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 4 cut(s) 373, 526, 918, 1235
LguI GCTCTTC 4 cut(s) 756, 971, 1182, 1267
LmnI GCTCC 2 cut(s) 105, 332
Lsp1109I GCAGC 5 cut(s) 278, 724, 1165, 1266, 1269
LweI GCATC 2 cut(s) 499, 1040
MaeI CTAG 5 cut(s) 14, 452, 855, 896, 927
MaeIII GTNAC 3 cut(s) 142, 307, 850
MalI GATC 4 cut(s) 375, 528, 920, 1237
MboI GATC 4 cut(s) 373, 526, 918, 1235
MhlI GDGCHC 1 cut(s) 961
MluCI AATT 6 cut(s) 188, 565, 864, 900, 1071, 1188
MlyI GAGTC 4 cut(s) 361, 751, 1044, 1292
MseI TTAA 3 cut(s) 282, 872, 1160
MspCI CTTAAG 1 cut(s) 1159
MspI CCGG 2 cut(s) 103, 140
MspR9I CCNGG 1 cut(s) 1102
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 1 cut(s) 1102
MvnI CGCG 3 cut(s) 158, 884, 1281
MwoI GCNNNNNNNGC 6 cut(s) 123, 263, 332, 461, 518, 779
NdeII GATC 4 cut(s) 373, 526, 918, 1235
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 3 cut(s) 81, 464, 521
NlaIV GGNNCC 1 cut(s) 1099
NmeAIII GCCGAG 1 cut(s) 1247
NmuCI GTSAC 1 cut(s) 850
NruI TCGCGA 1 cut(s) 1281
NspI RCATGY 1 cut(s) 521
PaeI GCATGC 1 cut(s) 521
PceI AGGCCT 1 cut(s) 393
PciSI GCTCTTC 4 cut(s) 756, 971, 1182, 1267
PctI GAATGC 1 cut(s) 714
PfeI GAWTC 6 cut(s) 5, 34, 201, 230, 659, 841
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 7 cut(s) 128, 157, 268, 714, 1155, 1256, 1259
PleI GAGTC 4 cut(s) 361, 750, 1043, 1292
PpsI GAGTC 4 cut(s) 361, 750, 1043, 1292
Psp6I CCWGG 1 cut(s) 1100
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 2 cut(s) 782, 911
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 1 cut(s) 1099
PspPI GGNCC 2 cut(s) 425, 889
PstI CTGCAG 2 cut(s) 616, 1155
RruI TCGCGA 1 cut(s) 1281
RsaI GTAC 3 cut(s) 790, 833, 1106
RsaNI GTAC 3 cut(s) 789, 832, 1105
Rsr2I CGGWCCG 1 cut(s) 889
RsrII CGGWCCG 1 cut(s) 889
SapI GCTCTTC 4 cut(s) 756, 971, 1182, 1267
SaqAI TTAA 3 cut(s) 282, 872, 1160
SatI GCNGC 7 cut(s) 127, 156, 267, 713, 1154, 1255, 1258
Sau3AI GATC 4 cut(s) 373, 526, 918, 1235
Sau96I GGNCC 2 cut(s) 425, 889
SchI GAGTC 4 cut(s) 361, 751, 1044, 1292
ScrFI CCNGG 1 cut(s) 1102
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 2 cut(s) 499, 1040
SfcI CTRYAG 2 cut(s) 612, 1151
SinI GGWCC 2 cut(s) 425, 889
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SphI GCATGC 1 cut(s) 521
Sse9I AATT 6 cut(s) 188, 565, 864, 900, 1071, 1188
SseBI AGGCCT 1 cut(s) 393
SsiI CCGC 7 cut(s) 124, 127, 156, 235, 247, 638, 858
SspMI CTAG 5 cut(s) 14, 452, 855, 896, 927
StuI AGGCCT 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 1100
TaaI ACNGT 4 cut(s) 148, 287, 620, 996
TaqI TCGA 5 cut(s) 192, 243, 353, 414, 1234
TaqII GACCGA 1 cut(s) 877
TasI AATT 6 cut(s) 188, 565, 864, 900, 1071, 1188
TatI WGTACW 2 cut(s) 788, 831
TauI GCSGC 2 cut(s) 129, 158
TfiI GAWTC 6 cut(s) 5, 34, 201, 230, 659, 841
Tru1I TTAA 3 cut(s) 282, 872, 1160
Tru9I TTAA 3 cut(s) 282, 872, 1160
TscAI CASTG 1 cut(s) 1155
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 5 cut(s) 266, 712, 1153, 1254, 1257
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 4 cut(s) 279, 287, 954, 1220
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 1 cut(s) 1155
Van91I CCANNNNNTGG 1 cut(s) 590
Vha464I CTTAAG 1 cut(s) 1159
VpaK11BI GGWCC 2 cut(s) 425, 889
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 3 cut(s) 188, 565, 900
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 5 cut(s) 14, 452, 855, 896, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.