Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Forward (+)

29911614 .. 29912955

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGAGAGTAAAAGGAGACGAGCAAATTGGGGTTCGGGTCCGTGTACGAGTGCAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

55

Amino Acids

6.0

Weight (kDa)

5.19

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	2 - 38	4.8e-13	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	28, 88
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	2 cut(s)	28, 88
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	31, 91
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	28, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	20, 92
CviJI	RGCY	1 cut(s)	85
CviKI_1	RGCY	1 cut(s)	85
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	2 cut(s)	30, 90
DpnII	GATC	2 cut(s)	28, 88
Eco47I	GGWCC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	23, 95
FaiI	YATR	3 cut(s)	21, 37, 93
FatI	CATG	2 cut(s)	19, 91
FbaI	TGATCA	1 cut(s)	88
Hin1II	CATG	2 cut(s)	23, 95
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	14, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	23, 95
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	28, 88
LpnPI	CCDG	3 cut(s)	45, 95, 99
MalI	GATC	2 cut(s)	30, 90
MboI	GATC	2 cut(s)	28, 88
MluCI	AATT	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	28, 88
NlaIII	CATG	2 cut(s)	23, 95
NlaIV	GGNNCC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	28, 88
Sau96I	GGNCC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	130
TasI	AATT	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.