Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

22584359 .. 22588884

Gene Structure 4526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGCAAAAAGAAGAAGAGAGGTCAACGGGCTGCTGGAGGCGATAAGAATGGAAGAGGACTGCGCCAATTTAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAGGGAAGAACCACTTATAACGAGCAACAATATGATGAGAAGAACATCAGGCGGAGGGTATATGATGCCCTGAATGTTCTAATGGCAATGGATATTATATCCAAGGATAAAAAGGAAATACAATGGAAGGGTTTGCCTCGAACCAGCCTGAATGATATTGAAGAACTGAAGACTGAGCGCCTAGGACTAGGGAGTAGGATTGAAAAGAAAGCTGTCTATCTGCAAGAACTAGAGGAACAATATTTAGGTCTTCAAAACCTGATACAACGAAATGAGCAATTATACTGCTCTGGAGATGCTCCCAGTGGGGGTGTGTCTTTACCTTTCATTCTTGTGCAGGAAAGTATTTCAATGGAGCCACCTATCAGCCTTAAGAATCTCTCTGCCTGCTCTAGTCTGGCTTCTAAGAGAAAGCACCAACAAATGGGTGGGTGGTACAGGATTGAAAAGGCTATACCCAACAACAACTTGACTGGGTGCGCATTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

208

Amino Acids

23.59

Weight (kDa)

9.58

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	30 - 89	3.2e-16	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	97 - 159	3.1e-14	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
Acc16I	TGCGCA	1 cut(s)	616
AccB7I	CCANNNNNTGG	1 cut(s)	559
AciI	CCGC	2 cut(s)	18, 187
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	443, 559
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	296, 338, 389, 486, 581, 622
AluBI	AGCT	3 cut(s)	6, 27, 347
AluI	AGCT	3 cut(s)	6, 27, 347
Alw21I	GWGCWC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	3 cut(s)	99, 315, 617
AvrII	CCTAGG	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	311, 377
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	317, 323, 365, 528
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	2 cut(s)	18, 66
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	2 cut(s)	19, 67
BmiI	GGNNCC	1 cut(s)	492
BmrI	ACTGGG	2 cut(s)	432, 618
BmsI	GCATC	2 cut(s)	190, 421
BmuI	ACTGGG	2 cut(s)	432, 618
BpiI	GAAGAC	2 cut(s)	311, 377
BpmI	CTGGAG	3 cut(s)	28, 90, 447
BsaJI	CCNNGG	2 cut(s)	237, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 559
Bse1I	ACTGG	2 cut(s)	438, 613
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	237, 316
BseLI	CCNNNNNNNGG	2 cut(s)	443, 559
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	438, 613
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	443, 559
Bsp1286I	GDGCHC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	18, 187
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	492
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	438, 613
BssECI	CCNNGG	2 cut(s)	237, 316
BssT1I	CCWWGG	2 cut(s)	237, 316
Bst6I	CTCTTC	2 cut(s)	44, 82
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	309, 540
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	3 cut(s)	99, 315, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	2 cut(s)	311, 377
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 445
Cac8I	GCNNGC	1 cut(s)	523
CfoI	GCGC	3 cut(s)	99, 315, 617
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	9 cut(s)	6, 27, 65, 282, 347, 493, 504, 536, 587
CviKI_1	RGCY	9 cut(s)	6, 27, 65, 282, 347, 493, 504, 536, 587
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	309, 540
Eam1104I	CTCTTC	2 cut(s)	44, 82
EarI	CTCTTC	2 cut(s)	44, 82
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	237, 316
Eco57I	CTGAAG	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	237, 316
ErhI	CCWWGG	2 cut(s)	237, 316
FaeI	CATG	1 cut(s)	112
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FatI	CATG	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	18, 66
Fsp4HI	GCNGC	2 cut(s)	18, 66
FspAI	RTGCGCAY	1 cut(s)	616
FspBI	CTAG	4 cut(s)	317, 323, 365, 528
FspI	TGCGCA	1 cut(s)	616
GlaI	GCGC	3 cut(s)	98, 314, 616
GluI	GCNGC	2 cut(s)	18, 66
GsuI	CTGGAG	3 cut(s)	28, 90, 447
HaeII	RGCGCY	1 cut(s)	316
HhaI	GCGC	3 cut(s)	99, 315, 617
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	3 cut(s)	97, 313, 615
HinP1I	GCGC	3 cut(s)	97, 313, 615
HincII	GTYRAC	1 cut(s)	59
HindII	GTYRAC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	426
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	39, 358, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	309, 540
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	3 cut(s)	97, 313, 615
LmnI	GCTCC	4 cut(s)	9, 24, 439, 490
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	190, 421
MaeI	CTAG	4 cut(s)	317, 323, 365, 528
MboII	GAAGA	8 cut(s)	58, 61, 99, 153, 187, 308, 316, 377
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	101, 413
MnlI	CCTC	6 cut(s)	47, 65, 83, 183, 282, 361
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	113, 467
MspCI	CTTAAG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	35
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	492
NsbI	TGCGCA	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	2 cut(s)	19, 67
PsiI	TTATAA	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	492
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	2 cut(s)	113, 467
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	18, 66
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	8 cut(s)	8, 29, 58, 349, 385, 396, 460, 499
SfaNI	GCATC	2 cut(s)	190, 421
SfcI	CTRYAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	113, 467
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	101, 413
SsiI	CCGC	2 cut(s)	18, 187
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	4 cut(s)	317, 323, 365, 528
StyI	CCWWGG	2 cut(s)	237, 316
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	101, 413
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	19, 445
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	125, 451
TspRI	CASTG	2 cut(s)	19, 445
Van91I	CCANNNNNTGG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmaJI	CCTAGG	1 cut(s)	316
XspI	CTAG	4 cut(s)	317, 323, 365, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.