Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

8046703 .. 8049549

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGCGTTGAGCACCCAAGTTAGAGCCTCCACTACTTCAGCTTTCCCATGGACATACGACGTGTTTTTGAGCTTCAGAGGCAAAGGCACCCGCAAGGGCTTCACAGACTACTTATACAATGAGTTGCAGCGGCATGGAATCAGGACTTTCAGGGACAAGCCTCAACTTGAAAGAGGCACAACCATCTCTCCGGAACTCCTCACAGCAATCAAGCAATCAAGGTTTGCGATCGTTGTTCTTTCGCCGAACTATGCTACTTCTACGTGGTGCTTGTTTGAACTGTCTAAGATTTTTGAATGCATGGAGGAGAGGGGGACAATTCTGCCAATCTTTTATGAGGTAGACCCCTCTCATGTGAGACATCAAAGGGGCAGCTTCGCTGAAGCGTTTGAAGAACATGATGAGAAGTTTGGGGAAGGTAATAAAGAGGTGGAAGGGTGGAGAGATGCTTTAACCAAAGTGGCCAGTCTCGTTGGATGGACTTCAAAGGCTTATAGGTATGAAACAGAGCTTATCAGAGAGATTGTGCAAGCACGGTGGAGCAAAGTGCATCCTAGTCTCACTGTATTTGGGTCATCAGAGAAGTTAGTCGGAATGGATACTAAGCTGGAGGAAATAGATGTTCTTTTAGATAAAGAAGCAAATGATGTTCGTTTTATAGGGATATGGGGGATGGGTGGTTTGGGTAAAACAACCCTTGCTAGACTAGTTTATGAGAAAATCTCTCATCAATTTGAAGTTTGCATCTTTCTAGTTGATGTCAGAGAGGTCTCCGCAACCCATGGTCTAGTTTATCTACAAAAACAAATTCTTTCCCAAATCTTGAAGGAAGAAAATGTTCAAATATGGGATGTTTATAGTGGAATTATCATGATAAAGAGATGTTTTTGTAATAAAGCGGTTCTTCTAGTTCTTGACGATGTGAATCAATCAGAGCAACTAGAAAACTTAGTGGGAGAAAAAGACTGCTTTGGTTCAAGGAGTAGAATCATCATTACAACTAGAGACCGGCATGTACTAGTCACACATGGTATAGAAAACCCATATGAGTTGAAGCGATTAAACAAAGATGAAGCTCTTCAGCTCTTTAGTTGGAAAGCCTTTAGGAAATATGAGCCTGAAGAAGATTATGTAGAACACTCTAAGAGTTTTGTTATGTATGCTGAAGGTCTTCCCTTAGCTCTTAAAACTTTGGGGTCTTTCTTGTACAAAAGAAGTCTAGATGCATGGAATTCTGCATTGGCAAAACTACGGAATACTCCAAACAAAACAGTTTTTGATTTGCTAAAAGTGAGTTATGATGGACTTGATGAGATGGAGAAGAAAATTTTTCTGCACATCACATGTTTTTCTTTGCAGTGGAAAACCAAGTTTATTATTGAACTACTATACAGTTCTGACGTTTGCACTCGTATTGCAATAGCTGTTCTTGTTGAGAAATCTCTCTTAACTATTTCATCAGGCAATGCAATAGGTGTACATCATTTGATACAAGACATGGGATGTAAAATTGCTCGACAAGAGTCTTATGAAGAGCCTGGTGGACGCAGTCGGTTGTGGCTTCGCAACGACATTTTTCATGTATTCACAAAGAATATGGCAGATTGGAATCTTGAAGCCTTCTCTAAAATGTGTCAACTGAAGCTCCTCCACATTCATAAGTTGAGGCTTGTTCTTGGCCCAAAATATCTTCCTAATACCTTGAGAGTCCTGAATTGGAGTTGGTATCCTTCAAAGTCTCTCCCACCAGGTTTTCAACCTGATGAACTTACTAGACTTTGTTTGGTTCATAGCAATATTGATCAACTCTGGGATGGAATAAAATACTTGGGCAAGTTGAAATTTATCAATCTTAGTTACTCCAAAAACTTGACAAGCACCCCAGATTTCACAGGTATTCAAAATCTTGAGAGGTTGGTTCTTAAGGATTGTACCAATTTAGTTAAGACTCATCCATCCATAACATTGCTCAAGAGACTCAAAATTTGGAATTTTAGAAACTGCAAAAGTATTAAGAGTCTACCAAGTGAAGTAAATATGGAGTTTCTTGAAATATTTGATGTGTCTGGCTGCTCAAAACTGAAAATGATTCCAGAATTTGTGGGGCAAATGAAAAGATTATCAAAGTTTTCTTTAGGTGGGAGTGCTGTTGAGAAACTGCCTTCATCAATTGAGCGCTTAAGTGAGAGTTTGTTGGAGCTTGAATTGAATGAAATTGTTATAAGAGAGCAGCCATACTCCTATTTTTCTCCAGCAGAATCTCATAGTATCATATTTTGGTTTATTTCCAAGAAAGAGTCCTCAACCTTTGATTCCTCTGTTAGCTTCCTTGAAGCTGAAGCATTTCTCTTCTTTGAGGGCATTAAGATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

791

Amino Acids

91.09

Weight (kDa)

8.03

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 198	1.1e-52	TIR domain
TIR_2	PF13676	21 - 117	1.7e-15	TIR domain
NB-ARC	PF00931	201 - 370	5.7e-26	NB-ARC domain
WHD_ROQ1	PF23282	438 - 509	2e-12	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2222
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	342, 2020
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	4 cut(s)	91, 130, 774, 899
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	7 cut(s)	807, 1231, 1326, 1841, 1983, 1990, 2096
AcuI	CTGAAG	8 cut(s)	21, 58, 402, 1064, 1140, 1185, 1661, 2358
AfaI	GTAC	4 cut(s)	1017, 1208, 1479, 1933
AfeI	AGCGCT	1 cut(s)	2177
AflII	CTTAAG	2 cut(s)	1922, 2179
AflIII	ACRYGT	2 cut(s)	60, 1343
AhlI	ACTAGT	2 cut(s)	706, 1018
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	1537, 1747
AjuI	GAANNNNNNNTTGG	2 cut(s)	1223, 1255
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	7 cut(s)	352, 473, 563, 775, 999, 1743, 1969
Aor13HI	TCCGGA	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	2177
AoxI	GGCC	2 cut(s)	462, 1678
ApeKI	GCWGC	4 cut(s)	127, 372, 2070, 2230
ApoI	RAATTY	7 cut(s)	807, 1231, 1326, 1841, 1983, 1990, 2096
ArsI	GACNNNNNNTTYG	2 cut(s)	1968, 2000
Asp700I	GAANNNNTTC	4 cut(s)	837, 1077, 1170, 2343
AspLEI	GCGC	1 cut(s)	2178
AspS9I	GGNCC	1 cut(s)	1679
BalI	TGGCCA	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	1163
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	139, 384, 2057, 2242
BccI	CCATC	7 cut(s)	191, 471, 667, 1295, 1309, 1808, 1963
BciT130I	CCWGG	2 cut(s)	1539, 1749
BciVI	GTATCC	2 cut(s)	592, 1737
BclI	TGATCA	1 cut(s)	1801
BcoDI	GTCTC	7 cut(s)	352, 473, 563, 775, 999, 1743, 1969
BcuI	ACTAGT	2 cut(s)	706, 1018
BfoI	RGCGCY	1 cut(s)	2179
BfrI	CTTAAG	2 cut(s)	1922, 2179
BfuI	GTATCC	2 cut(s)	592, 1737
BisI	GCNGC	5 cut(s)	128, 131, 373, 2071, 2231
BlsI	GCNGC	5 cut(s)	129, 132, 374, 2072, 2232
Bme1390I	CCNGG	2 cut(s)	1539, 1749
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	1679
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	1539, 1749
BmsI	GCATC	4 cut(s)	436, 559, 753, 1213
BoxI	GACNNNNGTC	1 cut(s)	1522
BpiI	GAAGAC	1 cut(s)	1163
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	2 cut(s)	629, 2235
Bpu10I	CCTNAGC	1 cut(s)	1177
BpuEI	CTTGAG	3 cut(s)	1723, 1928, 1955
BsaAI	YACGTR	1 cut(s)	264
BsaBI	GATNNNNATC	2 cut(s)	924, 1608
BsaI	GGTCTC	2 cut(s)	775, 999
BsaJI	CCNNGG	2 cut(s)	47, 781
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 1629, 1659
Bse118I	RCCGGY	1 cut(s)	1008
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	2 cut(s)	1471, 1964
Bse8I	GATNNNNATC	2 cut(s)	924, 1608
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	1539, 1749
BseDI	CCNNGG	2 cut(s)	47, 781
BseGI	GGATG	8 cut(s)	482, 550, 678, 856, 1508, 1819, 1951, 1955
BseJI	GATNNNNATC	2 cut(s)	924, 1608
BseMI	GCAATG	2 cut(s)	1471, 1964
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	3 cut(s)	188, 320, 1637
BseXI	GCAGC	4 cut(s)	139, 384, 2057, 2242
BsgI	GTGCAG	1 cut(s)	1319
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	464, 1680
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	191, 1009
BslFI	GGGAC	2 cut(s)	167, 328
BsmAI	GTCTC	7 cut(s)	352, 473, 563, 775, 999, 1743, 1969
BsmFI	GGGAC	2 cut(s)	167, 328
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	464, 1680
Bso31I	GGTCTC	2 cut(s)	775, 999
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	190
Bsp1407I	TGTACA	2 cut(s)	1206, 1477
Bsp143I	GATC	2 cut(s)	228, 1801
Bsp19I	CCATGG	2 cut(s)	47, 781
BspACI	CCGC	4 cut(s)	91, 130, 774, 899
BspANI	GGCC	2 cut(s)	464, 1680
BspEI	TCCGGA	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	1 cut(s)	88
BspQI	GCTCTTC	2 cut(s)	1083, 1527
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	2 cut(s)	1922, 2179
BspTNI	GGTCTC	2 cut(s)	775, 999
BsrDI	GCAATG	2 cut(s)	1471, 1964
BsrFI	RCCGGY	1 cut(s)	1008
BsrGI	TGTACA	2 cut(s)	1206, 1477
BsrI	ACTGG	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	1008
BssECI	CCNNGG	2 cut(s)	47, 781
BssMI	GATC	2 cut(s)	228, 1801
BssT1I	CCWWGG	2 cut(s)	47, 781
Bst2UI	CCWGG	2 cut(s)	1539, 1749
Bst4CI	ACNGT	5 cut(s)	282, 537, 565, 1273, 1394
Bst6I	CTCTTC	3 cut(s)	1083, 1527, 2354
BstAFI	CTTAAG	2 cut(s)	1922, 2179
BstAUI	TGTACA	2 cut(s)	1206, 1477
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	6 cut(s)	285, 603, 949, 1143, 1177, 1853
BstDSI	CCRYGG	2 cut(s)	47, 781
BstF5I	GGATG	8 cut(s)	482, 550, 678, 856, 1508, 1819, 1951, 1955
BstH2I	RGCGCY	1 cut(s)	2179
BstHHI	GCGC	1 cut(s)	2178
BstKTI	GATC	2 cut(s)	231, 1804
BstMAI	GTCTC	7 cut(s)	352, 473, 563, 775, 999, 1743, 1969
BstMBI	GATC	2 cut(s)	228, 1801
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	2 cut(s)	1539, 1749
BstNSI	RCATGY	2 cut(s)	1016, 1347
BstPAI	GACNNNNGTC	1 cut(s)	1522
BstSCI	CCNGG	2 cut(s)	1537, 1747
BstV1I	GCAGC	4 cut(s)	139, 384, 2057, 2242
BstV2I	GAAGAC	1 cut(s)	1163
BsuI	GTATCC	2 cut(s)	592, 1737
BsuRI	GGCC	2 cut(s)	464, 1680
BtgI	CCRYGG	2 cut(s)	47, 781
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	8 cut(s)	482, 550, 678, 856, 1508, 1819, 1951, 1955
BtsI	GCAGTG	1 cut(s)	1364
BtsIMutI	CAGTG	2 cut(s)	561, 1364
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	1 cut(s)	2178
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	1 cut(s)	1679
CseI	GACGC	1 cut(s)	1554
CsiI	ACCWGGT	1 cut(s)	1747
Csp6I	GTAC	4 cut(s)	1016, 1207, 1478, 1932
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviQI	GTAC	4 cut(s)	1016, 1207, 1478, 1932
DdeI	CTNAG	6 cut(s)	285, 603, 949, 1143, 1177, 1853
DpnI	GATC	2 cut(s)	230, 1803
DpnII	GATC	2 cut(s)	228, 1801
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	3 cut(s)	1083, 1527, 2354
EarI	CTCTTC	3 cut(s)	1083, 1527, 2354
Eco130I	CCWWGG	2 cut(s)	47, 781
Eco31I	GGTCTC	2 cut(s)	775, 999
Eco47III	AGCGCT	1 cut(s)	2177
Eco57I	CTGAAG	8 cut(s)	21, 58, 402, 1064, 1140, 1185, 1661, 2358
EcoRI	GAATTC	1 cut(s)	1231
EcoRII	CCWGG	2 cut(s)	1537, 1747
EcoT14I	CCWWGG	2 cut(s)	47, 781
EcoT22I	ATGCAT	2 cut(s)	302, 1228
ErhI	CCWWGG	2 cut(s)	47, 781
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	2 cut(s)	167, 328
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	1 cut(s)	1045
FbaI	TGATCA	1 cut(s)	1801
FblI	GTMKAC	2 cut(s)	342, 2020
Fnu4HI	GCNGC	5 cut(s)	128, 131, 373, 2071, 2231
FokI	GGATG	8 cut(s)	489, 537, 685, 863, 1515, 1826, 1938, 1942
Fsp4HI	GCNGC	5 cut(s)	128, 131, 373, 2071, 2231
GlaI	GCGC	1 cut(s)	2177
GluI	GCNGC	5 cut(s)	128, 131, 373, 2071, 2231
GsuI	CTGGAG	2 cut(s)	629, 2235
HaeII	RGCGCY	1 cut(s)	2179
HaeIII	GGCC	2 cut(s)	464, 1680
HapII	CCGG	2 cut(s)	191, 1009
HgaI	GACGC	1 cut(s)	1554
HhaI	GCGC	1 cut(s)	2178
Hin6I	GCGC	1 cut(s)	2176
HinP1I	GCGC	1 cut(s)	2176
HincII	GTYRAC	1 cut(s)	1637
HindII	GTYRAC	1 cut(s)	1637
HpaII	CCGG	2 cut(s)	191, 1009
Hpy166II	GTNNAC	5 cut(s)	343, 1478, 1544, 1637, 2021
Hpy188I	TCNGA	7 cut(s)	77, 518, 580, 593, 764, 934, 1399
Hpy8I	GTNNAC	5 cut(s)	343, 1478, 1544, 1637, 2021
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	7 cut(s)	410, 428, 820, 1160, 1630, 1740, 2172
HpyCH4III	ACNGT	5 cut(s)	282, 537, 565, 1273, 1394
HpyCH4IV	ACGT	3 cut(s)	60, 263, 1401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	6 cut(s)	285, 603, 949, 1143, 1177, 1853
HpySE526I	ACGT	3 cut(s)	60, 263, 1401
HspAI	GCGC	1 cut(s)	2176
Kpn2I	TCCGGA	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	1801
Kzo9I	GATC	2 cut(s)	228, 1801
LguI	GCTCTTC	2 cut(s)	1083, 1527
LmnI	GCTCC	3 cut(s)	540, 1650, 2197
Lsp1109I	GCAGC	4 cut(s)	139, 384, 2057, 2242
LweI	GCATC	4 cut(s)	436, 559, 753, 1213
MabI	ACCWGGT	1 cut(s)	1747
MaeII	ACGT	3 cut(s)	60, 263, 1401
MaeIII	GTNAC	2 cut(s)	1021, 1856
MalI	GATC	2 cut(s)	230, 1803
MboI	GATC	2 cut(s)	228, 1801
MfeI	CAATTG	1 cut(s)	2169
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	6 cut(s)	1532, 1716, 1942, 1971, 2026, 2306
MmeI	TCCRAC	4 cut(s)	454, 571, 1073, 2175
Mox20I	TGGCCA	1 cut(s)	464
Mph1103I	ATGCAT	2 cut(s)	302, 1228
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	4 cut(s)	837, 1077, 1170, 2343
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	9 cut(s)	452, 1061, 1185, 1448, 1923, 1944, 2013, 2180, 2364
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	130
MspCI	CTTAAG	2 cut(s)	1922, 2179
MspI	CCGG	2 cut(s)	191, 1009
MspR9I	CCNGG	2 cut(s)	1539, 1749
MunI	CAATTG	1 cut(s)	2169
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	1539, 1749
MwoI	GCNNNNNNNGC	1 cut(s)	78
NcoI	CCATGG	2 cut(s)	47, 781
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	2 cut(s)	228, 1801
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	1021
NsiI	ATGCAT	2 cut(s)	302, 1228
NspI	RCATGY	2 cut(s)	1016, 1347
PagI	TCATGA	1 cut(s)	870
PciI	ACATGT	1 cut(s)	1343
PciSI	GCTCTTC	2 cut(s)	1083, 1527
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	4 cut(s)	837, 1077, 1170, 2343
PfeI	GAWTC	7 cut(s)	138, 925, 987, 1609, 2089, 2258, 2312
PflFI	GACNNNGTC	1 cut(s)	1548
PkrI	GCNGC	5 cut(s)	129, 132, 374, 2072, 2232
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	6 cut(s)	1531, 1715, 1942, 1971, 2025, 2305
PpsI	GAGTC	6 cut(s)	1531, 1715, 1942, 1971, 2025, 2305
Ppu21I	YACGTR	1 cut(s)	264
PscI	ACATGT	1 cut(s)	1343
PshAI	GACNNNNGTC	1 cut(s)	1522
PsiI	TTATAA	1 cut(s)	2222
Psp6I	CCWGG	2 cut(s)	1537, 1747
PspGI	CCWGG	2 cut(s)	1537, 1747
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	1679
PsyI	GACNNNGTC	1 cut(s)	1548
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	4 cut(s)	1017, 1208, 1479, 1933
RsaNI	GTAC	4 cut(s)	1016, 1207, 1478, 1932
SapI	GCTCTTC	2 cut(s)	1083, 1527
SaqAI	TTAA	9 cut(s)	452, 1061, 1185, 1448, 1923, 1944, 2013, 2180, 2364
SatI	GCNGC	5 cut(s)	128, 131, 373, 2071, 2231
Sau3AI	GATC	2 cut(s)	228, 1801
Sau96I	GGNCC	1 cut(s)	1679
SchI	GAGTC	6 cut(s)	1532, 1716, 1942, 1971, 2026, 2306
ScrFI	CCNGG	2 cut(s)	1539, 1749
SduI	GDGCHC	1 cut(s)	14
SexAI	ACCWGGT	1 cut(s)	1747
SfaNI	GCATC	4 cut(s)	436, 559, 753, 1213
SmlI	CTYRAG	5 cut(s)	1702, 1907, 1922, 1970, 2179
SmoI	CTYRAG	5 cut(s)	1702, 1907, 1922, 1970, 2179
SpeI	ACTAGT	2 cut(s)	706, 1018
SsiI	CCGC	4 cut(s)	91, 130, 774, 899
SspI	AATATT	2 cut(s)	1798, 2055
StyD4I	CCNGG	2 cut(s)	1537, 1747
StyI	CCWWGG	2 cut(s)	47, 781
TaaI	ACNGT	5 cut(s)	282, 537, 565, 1273, 1394
TaiI	ACGT	3 cut(s)	63, 266, 1404
TaqI	TCGA	1 cut(s)	1516
TatI	WGTACW	3 cut(s)	1015, 1206, 1477
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	7 cut(s)	138, 925, 987, 1609, 2089, 2258, 2312
Tru1I	TTAA	9 cut(s)	452, 1061, 1185, 1448, 1923, 1944, 2013, 2180, 2364
Tru9I	TTAA	9 cut(s)	452, 1061, 1185, 1448, 1923, 1944, 2013, 2180, 2364
TscAI	CASTG	2 cut(s)	568, 1364
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	4 cut(s)	127, 372, 2070, 2230
Tsp45I	GTSAC	1 cut(s)	1021
TspGWI	ACGGA	1 cut(s)	1267
TspRI	CASTG	2 cut(s)	568, 1364
Tth111I	GACNNNGTC	1 cut(s)	1548
Vha464I	CTTAAG	2 cut(s)	1922, 2179
XapI	RAATTY	7 cut(s)	807, 1231, 1326, 1841, 1983, 1990, 2096
XbaI	TCTAGA	1 cut(s)	1219
XceI	RCATGY	2 cut(s)	1016, 1347
XmiI	GTMKAC	2 cut(s)	342, 2020
XmnI	GAANNNNTTC	4 cut(s)	837, 1077, 1170, 2343
Zsp2I	ATGCAT	2 cut(s)	302, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.