Rroxscaffold_4G00328380
BZIP Family

G-box-binding factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
61386759 .. 61389325
2567 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00328380.1

Sequence Viewer

Length: 348 bp
ATGGCGCAGATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGACTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGGACTCTCGTACAGTTCAGAGAAACTAGTTAGCATTCAAAAATATGTTGTTGCTGCTGAAAACAATATGGACCTTGTTTTTGTGGAGTATGGTGCATACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGTAGCTCAAGACTAAATAATAAAGGTTCGATGTTGGACAAGGAGTTCAGAAGTTCAAAGCGGGCGACGGAGTGGTAG

Protein Analysis

115

Amino Acids

12.3

Weight (kDa)

9.55

Isoelectric Point (pI)

22.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 176, 327
AhlI ACTAGT 1 cut(s) 163
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 5 cut(s) 25, 29, 53, 249, 276
AluI AGCT 5 cut(s) 25, 29, 53, 249, 276
ApeKI GCWGC 2 cut(s) 53, 191
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 208
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 40, 178
BccI CCATC 3 cut(s) 4, 118, 263
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 2 cut(s) 26, 164
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 2 cut(s) 54, 192
BlsI GCNGC 2 cut(s) 55, 193
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 249
BmtI GCTAGC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 40, 178
BsmI GAATGC 1 cut(s) 171
BspACI CCGC 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 4 cut(s) 23, 27, 264, 333
BstHHI GCGC 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 40, 178
Cac8I GCNNGC 4 cut(s) 23, 27, 264, 333
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 6 cut(s) 25, 29, 35, 53, 249, 276
CviKI_1 RGCY 6 cut(s) 25, 29, 35, 53, 249, 276
CviQI GTAC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 4 cut(s) 183, 206, 228, 235
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FauI CCCGC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 54, 192
Fsp4HI GCNGC 2 cut(s) 54, 192
FspBI CTAG 2 cut(s) 26, 164
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 54, 192
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 157, 320
Hpy188III TCNNGA 2 cut(s) 117, 279
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 56, 233, 266
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 42, 51, 72, 96, 102
Lsp1109I GCAGC 2 cut(s) 40, 178
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 26, 164
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 171
NheI GCTAGC 1 cut(s) 25
PctI GAATGC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 55, 193
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SatI GCNGC 2 cut(s) 54, 192
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 135
SetI ASST 8 cut(s) 27, 31, 55, 70, 213, 251, 278, 298
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 163
SsiI CCGC 1 cut(s) 331
SspMI CTAG 2 cut(s) 26, 164
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 299
TseI GCWGC 2 cut(s) 53, 191
VpaK11BI GGWCC 1 cut(s) 208
XspI CTAG 2 cut(s) 26, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.