Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

3503011 .. 3507549

Gene Structure 4539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTGAGGCCGTACGCAGCGAAGGGAAAGAAGCGGAAGTCGAGGGAAGAGAAGTACGACAGAGATGAAGAAGAATTAGCAGAACAAGTAGAGGAACCCAGCAAAACAGCCAAGGTTGACGACCAATTCGAACTTGAGGGCATTCCTATTGCGCCAACTGAGCCCAACCCCAAGAACGGACCTGGGGTCATCTTCATCCTCGAGAAAGCTTGTTTGGAAATCGGCAAAGTTGGAAAGACTGAACAGCTCTTGAATTCTGATGATCACGCAAATTTCTTGAAGAAGAAAGGCAAAAACCCTGCTCATTATAGGCCTGATATCCTTCATCAGGCTCTGCTTATGGTTTTAGATAGCCCAATTAATAAAGCCGGGAGGTTGAGATGTGTGTATGTGAAGACTGAGGATGGTAAACTTATTGAGATTAAGCCATTTGTTCGTATCCCAAGGACATTTAAGCGGTTCTCTGGTGTCATGTTGCAGTTGCTACAGAAACTGAGTATATCTGCAGTCGGTAAGCGTGAGAAACTTATGCGTATGATTAAGAACCCTGTGACACAGTATTTACCTGTCAACTCCCGAAAAGTAGGACTCTCGTACAGTTCAGAGAAATTAGTTAGCATTCAAAATTATGTTGCTGCTGCTGAAAACAATACGGACCTTGTTTTTGTGGTCGGTGCAATGGCTCATGGCAAAGTTGAGACGGACTATACTGAGGATTTTGTATCGATTTGTAGTTATCCATTGAGTGCTGCGTACTGTATCACAATGATTTGCCAAGCATTGGCGGGGAAGTGGAACATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

269

Amino Acids

30.12

Weight (kDa)

9.1

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	65 - 261	1.6e-68	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	781
AciI	CCGC	3 cut(s)	34, 457, 785
AcsI	RAATTY	2 cut(s)	253, 271
AfaI	GTAC	4 cut(s)	14, 56, 596, 755
AfiI	CCNNNNNNNGG	3 cut(s)	176, 328, 781
AgsI	TTSAA	3 cut(s)	253, 280, 623
AhdI	GACNNNNNGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	209, 247
AluI	AGCT	2 cut(s)	209, 247
Alw26I	GTCTC	1 cut(s)	692
AlwNI	CAGNNNCTG	2 cut(s)	334, 493
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	8, 311
ApeKI	GCWGC	4 cut(s)	17, 635, 638, 749
ApoI	RAATTY	2 cut(s)	253, 271
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 647, 679
AseI	ATTAAT	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	179, 655
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	179, 655
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	29, 622, 625, 736
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	449
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	692
BfmI	CTRYAG	2 cut(s)	485, 504
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	18, 636, 639, 750
BlsI	GCNGC	4 cut(s)	19, 637, 640, 751
Bme1390I	CCNGG	2 cut(s)	183, 370
Bme18I	GGWCC	2 cut(s)	179, 655
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	179, 655
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	183, 370
BpiI	GAAGAC	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	725
BsaJI	CCNNGG	3 cut(s)	111, 182, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 328, 781
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	111, 182, 443
BseGI	GGATG	2 cut(s)	195, 409
BseLI	CCNNNNNNNGG	3 cut(s)	176, 328, 781
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	4 cut(s)	150, 390, 485, 702
BseXI	GCAGC	4 cut(s)	29, 622, 625, 736
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	10, 313
BshVI	ATCGAT	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	369
BsiWI	CGTACG	1 cut(s)	12
BslI	CCNNNNNNNGG	3 cut(s)	176, 328, 781
BsmAI	GTCTC	1 cut(s)	692
BsmBI	CGTCTC	1 cut(s)	692
BsmI	GAATGC	2 cut(s)	141, 618
BsnI	GGCC	2 cut(s)	10, 313
BsoBI	CYCGRG	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	3 cut(s)	34, 457, 785
BspANI	GGCC	2 cut(s)	10, 313
BspCNI	CTCAG	4 cut(s)	151, 391, 486, 703
BspDI	ATCGAT	1 cut(s)	725
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	684
BssECI	CCNNGG	3 cut(s)	111, 182, 443
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	2 cut(s)	111, 443
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	558, 599, 758
Bst6I	CTCTTC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	159, 399, 494, 711
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	195, 409
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	181, 368
BstSFI	CTRYAG	2 cut(s)	485, 504
BstV1I	GCAGC	4 cut(s)	29, 622, 625, 736
BstV2I	GAAGAC	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	725
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	10, 313
BsuTUI	ATCGAT	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	195, 409
CaiI	CAGNNNCTG	2 cut(s)	334, 493
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	179, 655
ClaI	ATCGAT	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	13, 55, 595, 754
CviAII	CATG	2 cut(s)	472, 686
CviQI	GTAC	4 cut(s)	13, 55, 595, 754
DdeI	CTNAG	4 cut(s)	159, 399, 494, 711
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	111, 443
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	179, 655
Eco88I	CYCGRG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	111, 443
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	111, 443
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	2 cut(s)	475, 689
FatI	CATG	2 cut(s)	471, 685
FauI	CCCGC	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	18, 636, 639, 750
FokI	GGATG	2 cut(s)	182, 416
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	18, 636, 639, 750
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	18, 636, 639, 750
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	10, 313
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	475, 689
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	118, 571
HindII	GTYRAC	2 cut(s)	118, 571
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	588
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	118, 410, 571
Hpy188I	TCNGA	2 cut(s)	259, 604
Hpy188III	TCNNGA	4 cut(s)	202, 250, 277, 576
Hpy8I	GTNNAC	3 cut(s)	118, 410, 571
HpyAV	CCTTC	2 cut(s)	16, 332
HpyCH4III	ACNGT	3 cut(s)	558, 599, 758
HpyCH4V	TGCA	3 cut(s)	478, 506, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	4 cut(s)	159, 399, 494, 711
Hsp92II	CATG	2 cut(s)	475, 689
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	262
Lsp1109I	GCAGC	4 cut(s)	29, 622, 625, 736
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	7 cut(s)	59, 80, 83, 184, 292, 295, 406
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	7 cut(s)	74, 125, 253, 271, 357, 608, 625
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	36, 85, 130, 209, 366, 394, 706
MseI	TTAA	4 cut(s)	360, 423, 453, 540
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	183, 370
Mva1269I	GAATGC	2 cut(s)	141, 618
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	475, 689
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	2 cut(s)	141, 618
Pfl23II	CGTACG	1 cut(s)	12
PflMI	CCANNNNNTGG	1 cut(s)	781
PkrI	GCNGC	4 cut(s)	19, 637, 640, 751
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	181
PspLI	CGTACG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	179, 655
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	2 cut(s)	334, 493
RsaI	GTAC	4 cut(s)	14, 56, 596, 755
RsaNI	GTAC	4 cut(s)	13, 55, 595, 754
SaqAI	TTAA	4 cut(s)	360, 423, 453, 540
SatI	GCNGC	4 cut(s)	18, 636, 639, 750
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	179, 655
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	2 cut(s)	183, 370
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	117, 184, 211, 249, 377, 568, 660
SfcI	CTRYAG	2 cut(s)	485, 504
Sfr274I	CTCGAG	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	2 cut(s)	179, 655
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	134, 200
SmoI	CTYRAG	2 cut(s)	134, 200
Sse9I	AATT	7 cut(s)	74, 125, 253, 271, 357, 608, 625
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	34, 457, 785
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	181, 368
StyI	CCWWGG	2 cut(s)	111, 443
TaaI	ACNGT	3 cut(s)	558, 599, 758
TaqI	TCGA	4 cut(s)	41, 129, 201, 725
TasI	AATT	7 cut(s)	74, 125, 253, 271, 357, 608, 625
Tru1I	TTAA	4 cut(s)	360, 423, 453, 540
Tru9I	TTAA	4 cut(s)	360, 423, 453, 540
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	4 cut(s)	17, 635, 638, 749
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	81, 184, 314
TspGWI	ACGGA	3 cut(s)	192, 668, 716
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	179, 655
VspI	ATTAAT	1 cut(s)	360
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	253, 271
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.