Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000240.1

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

227609 .. 230420

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000240.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggtgcagatgggaaagagcgagctagcttcagccaaaaaacccaatggagctgcaggaaatacatgtttggttagtggcaaggctggggagagtggaaaagcaacttctggttctggaatgatggagtttcacaaagtggcattttgtgatctgcaggctctccacatggttttatatagctcgattaataaagctggaaagttgcgatgtgtgtatatgaagaccaaggatgataaacttattgagattaaaccatatgttcgtatcccaaggacgtttaagctattctttggtgtcatgttgcagctgctacagaaactgagtatatctgtcgttggtaagcgtgagaaacttatgcgtatgatcaagaaccctatgacacagtatttacctgttaactcccggaaagtaggactctcgtacagttcagagaaactagttagcattcaaaaatatgttgctgctgctgaaaacaatatggaccttgtttttgtggagtacggtgcatacaagaagggaagctttgacaagatgcttgcagatggagcaaatgcaaaaaataacacagctttagtgcctgggaagcccgtagtttctgtgcctgcaactagtctgaatatgggaatggacttgtggaatgcatcccccgctggtgctggaactgcaaaaatgagaggaaatcaatctggagccccatcagctgtcggtgttctagagacatccattaaactacaaaggtcccctagccatatatggcctcagctccaactagggatggcaatggggcgggttggggatggggatcacaataccatcctcatccccggggtcattttctaccctcatccccgccccaatccccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

289

Amino Acids

31.25

Weight (kDa)

9.87

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	651, 790, 853
AclWI	GGATC	1 cut(s)	813
AcuI	CTGAAG	1 cut(s)	15
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	2 cut(s)	425, 503
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	452
AhlI	ACTAGT	2 cut(s)	439, 611
AjnI	CCWGG	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	1 cut(s)	758
ApeKI	GCWGC	5 cut(s)	53, 307, 310, 464, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	484, 741
AsuC2I	CCSGG	3 cut(s)	406, 828, 829
AsuNHI	GCTAGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	484, 741
BanII	GRGCYC	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BccI	CCATC	7 cut(s)	4, 118, 539, 706, 772, 794, 824
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	366
BcnI	CCSGG	3 cut(s)	406, 828, 829
BcoDI	GTCTC	1 cut(s)	713
BcuI	ACTAGT	2 cut(s)	439, 611
BfaI	CTAG	6 cut(s)	26, 440, 612, 716, 747, 773
BfmI	CTRYAG	3 cut(s)	54, 155, 314
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
BlsI	GCNGC	5 cut(s)	55, 309, 312, 466, 469
Bme1390I	CCNGG	4 cut(s)	406, 582, 828, 829
Bme18I	GGWCC	2 cut(s)	484, 741
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	484, 741
BmiI	GGNNCC	2 cut(s)	694, 743
BmrFI	CCNGG	4 cut(s)	406, 582, 828, 829
BmsI	GCATC	2 cut(s)	525, 653
BmtI	GCTAGC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	762
BpuMI	CCSGG	3 cut(s)	406, 828, 829
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	6 cut(s)	228, 272, 581, 826, 827, 828
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	6 cut(s)	228, 272, 581, 826, 827, 828
BseGI	GGATG	8 cut(s)	238, 644, 722, 783, 805, 816, 822, 847
BseJI	GATNNNNATC	1 cut(s)	804
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	314, 776
BseXI	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BseYI	CCCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	2 cut(s)	406, 828
BslFI	GGGAC	1 cut(s)	727
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	2 cut(s)	447, 646
BsnI	GGCC	1 cut(s)	760
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	151, 366, 805
BspACI	CCGC	3 cut(s)	651, 790, 853
BspANI	GGCC	1 cut(s)	760
BspCNI	CTCAG	2 cut(s)	315, 775
BspLI	GGNNCC	2 cut(s)	694, 743
BspMAI	CTGCAG	2 cut(s)	58, 159
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	789
BssECI	CCNNGG	6 cut(s)	228, 272, 581, 826, 827, 828
BssMI	GATC	3 cut(s)	151, 366, 805
BssT1I	CCWWGG	2 cut(s)	228, 272
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	3 cut(s)	387, 428, 506
BstC8I	GCNNGC	5 cut(s)	23, 27, 159, 540, 606
BstDEI	CTNAG	2 cut(s)	323, 762
BstF5I	GGATG	8 cut(s)	238, 644, 722, 783, 805, 816, 822, 847
BstKTI	GATC	3 cut(s)	154, 369, 808
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	3 cut(s)	151, 366, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	548, 586, 650, 665, 701
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	4 cut(s)	404, 580, 826, 827
BstSFI	CTRYAG	3 cut(s)	54, 155, 314
BstV1I	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BstV2I	GAAGAC	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	760
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	8 cut(s)	238, 644, 722, 783, 805, 816, 822, 847
Cac8I	GCNNGC	5 cut(s)	23, 27, 159, 540, 606
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	484, 741
Cfr9I	CCCGGG	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	424, 502
CviAII	CATG	3 cut(s)	66, 169, 301
CviQI	GTAC	2 cut(s)	424, 502
DdeI	CTNAG	2 cut(s)	323, 762
DpnI	GATC	3 cut(s)	153, 368, 807
DpnII	GATC	3 cut(s)	151, 366, 805
DraIII	CACNNNGTG	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	228, 272
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	484, 741
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	2 cut(s)	228, 272
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	228, 272
FaeI	CATG	3 cut(s)	69, 172, 304
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 509, 541
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	65, 168, 300
FauI	CCCGC	3 cut(s)	658, 783, 860
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
FokI	GGATG	8 cut(s)	245, 631, 709, 790, 803, 809, 812, 834
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
FspBI	CTAG	6 cut(s)	26, 440, 612, 716, 747, 773
GluI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	760
HapII	CCGG	2 cut(s)	406, 828
Hin1II	CATG	3 cut(s)	69, 172, 304
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	1 cut(s)	417
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	2 cut(s)	406, 828
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	433, 618
Hpy188III	TCNNGA	4 cut(s)	117, 370, 690, 716
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	3 cut(s)	387, 428, 506
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	548, 586, 650, 665, 701
HpyF3I	CTNAG	2 cut(s)	323, 762
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	69, 172, 304
Ksp22I	TGATCA	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	151, 366, 805
LmnI	GCTCC	4 cut(s)	50, 548, 692, 771
Lsp1109I	GCAGC	5 cut(s)	40, 297, 319, 451, 454
LweI	GCATC	2 cut(s)	525, 653
MaeI	CTAG	6 cut(s)	26, 440, 612, 716, 747, 773
MaeII	ACGT	1 cut(s)	278
MalI	GATC	3 cut(s)	153, 368, 807
MboI	GATC	3 cut(s)	151, 366, 805
MboII	GAAGA	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	697
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	4 cut(s)	671, 771, 830, 855
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	5 cut(s)	189, 252, 282, 399, 729
MspA1I	CMGCKG	3 cut(s)	310, 653, 704
MspI	CCGG	2 cut(s)	406, 828
MspR9I	CCNGG	4 cut(s)	406, 582, 828, 829
Mva1269I	GAATGC	2 cut(s)	447, 646
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	548, 586, 650, 665, 701
NciI	CCSGG	3 cut(s)	406, 828, 829
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	151, 366, 805
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	69, 172, 304
NlaIV	GGNNCC	2 cut(s)	694, 743
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	69
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	2 cut(s)	447, 646
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	5 cut(s)	55, 309, 312, 466, 469
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PpuMI	RGGWCCY	1 cut(s)	741
PscI	ACATGT	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	694, 743
PspPI	GGNCC	2 cut(s)	484, 741
PspPPI	RGGWCCY	1 cut(s)	741
PstI	CTGCAG	2 cut(s)	58, 159
PstNI	CAGNNNCTG	1 cut(s)	322
PvuII	CAGCTG	2 cut(s)	310, 704
RsaI	GTAC	2 cut(s)	425, 503
RsaNI	GTAC	2 cut(s)	424, 502
SaqAI	TTAA	5 cut(s)	189, 252, 282, 399, 729
SatI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
Sau3AI	GATC	3 cut(s)	151, 366, 805
Sau96I	GGNCC	2 cut(s)	484, 741
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	4 cut(s)	406, 582, 828, 829
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	2 cut(s)	525, 653
SfcI	CTRYAG	3 cut(s)	54, 155, 314
SinI	GGWCC	2 cut(s)	484, 741
SmaI	CCCGGG	1 cut(s)	829
SpeI	ACTAGT	2 cut(s)	439, 611
SsiI	CCGC	3 cut(s)	651, 790, 853
SspMI	CTAG	6 cut(s)	26, 440, 612, 716, 747, 773
StyD4I	CCNGG	4 cut(s)	404, 580, 826, 827
StyI	CCWWGG	2 cut(s)	228, 272
TaaI	ACNGT	3 cut(s)	387, 428, 506
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	185
Tru1I	TTAA	5 cut(s)	189, 252, 282, 399, 729
Tru9I	TTAA	5 cut(s)	189, 252, 282, 399, 729
TseI	GCWGC	5 cut(s)	53, 307, 310, 464, 467
TspDTI	ATGAA	1 cut(s)	236
TspMI	CCCGGG	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	484, 741
VspI	ATTAAT	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	1 cut(s)	69
XmaI	CCCGGG	1 cut(s)	827
XspI	CTAG	6 cut(s)	26, 440, 612, 716, 747, 773
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.