Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

10323060 .. 10326202

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1085000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGAGGCCGTATGCAGTGAAGGGAAAGAAGCGAAAGAAGAAGGCAGATGTATACGACAGAGCAGAGGAAGAAGAAGAAGCAGCAGCACCGGCAGCAGAACCAGAAGAAACAGAGACAGAGGAAGCCGATAAGAAGCGGAGCAAAGGAAATGAAGCAGAAGAAAGGAAGGGTAACCCAATTGAGCTCGAGGGTATTCCAATGGCCCCAGCAGAGATTAACCCCAAGAACGGACCTGGTGCTATCTTCATCCTCGAGAAAGCTTCTCTGGAAGTTGCCAAAGTTGGAAAGACTTATCAGCTATTGAATTCTGACGAGCACTCAAATTTCCTGAGGAAGAACAACAAGGATCCTGCTCTTTACCGGCCGGATATCCTTCATCAGGCTCTCCTTATGGTTTTAGATAGCCCAATTAATAAAGCTGGGAGGTTGCGAAACGTGTATGTGAGAACTGCAGCAGGTGTTCTAATTGAAGTTAAGCCATATGTTCGTATTCCGAGAACATTTAAGCGGTTCGCTGGTGTCATGTTGCAGCTGCTACAAAAACTGAGTATATCTGCTGTTGGTAAGCGTGAGAAACTTATGCGTGTGATAAAGAACCCTGTGACACAGTATTTACCTGTCAACTCTCGTAAAATAGGCTTCTCATACAGTTCGGAAAAATTGGTAAACATACAGAATTATGTTGCTAGTTCTGAAAACAGTGCGGACTTTGTTTTTGTGGTTGGTGCGATGGCTCATGGGAAAGTTGAGACAGACTATATTGAGGATTTCATTTCAATATCTGGTTATCCCTTGAGTGCGGCATATTGTATCACGATGATTTGCCAGGCGTTGGCAGGAAAGTGGAACATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

287

Amino Acids

31.89

Weight (kDa)

9.15

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	83 - 279	1.7e-69	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	139, 511, 707, 803
AclWI	GGATC	2 cut(s)	344, 357
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	307, 325
AfiI	CCNNNNNNNGG	3 cut(s)	230, 382, 835
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	307, 473, 780
AjnI	CCWGG	2 cut(s)	235, 828
AluBI	AGCT	5 cut(s)	187, 263, 301, 422, 535
AluI	AGCT	5 cut(s)	187, 263, 301, 422, 535
Alw21I	GWGCWC	2 cut(s)	189, 321
Alw26I	GTCTC	2 cut(s)	110, 746
AlwI	GGATC	2 cut(s)	344, 357
Ama87I	CYCGRG	2 cut(s)	188, 254
AoxI	GGCC	3 cut(s)	8, 204, 365
ApeKI	GCWGC	6 cut(s)	83, 86, 95, 455, 532, 535
ApoI	RAATTY	2 cut(s)	307, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AseI	ATTAAT	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	205, 233
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	188, 254
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	189, 321
BbvI	GCAGC	6 cut(s)	95, 98, 107, 467, 522, 544
BccI	CCATC	1 cut(s)	727
BciT130I	CCWGG	2 cut(s)	237, 830
BcoDI	GTCTC	2 cut(s)	110, 746
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	7 cut(s)	84, 87, 96, 456, 533, 536, 804
BlsI	GCNGC	7 cut(s)	85, 88, 97, 457, 534, 537, 805
Bme1390I	CCNGG	2 cut(s)	237, 830
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	2 cut(s)	188, 254
BmgT120I	GGNCC	2 cut(s)	205, 233
BmiI	GGNNCC	2 cut(s)	207, 351
BmrFI	CCNGG	2 cut(s)	237, 830
BpuEI	CTTGAG	1 cut(s)	817
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 382, 835
Bse118I	RCCGGY	2 cut(s)	91, 363
Bse21I	CCTNAGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	237, 830
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	230, 382, 835
BseMII	CTCAG	2 cut(s)	323, 539
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	6 cut(s)	95, 98, 107, 467, 522, 544
BseYI	CCCAGC	2 cut(s)	208, 422
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	10, 206, 367
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	189, 321
BsiHKCI	CYCGRG	2 cut(s)	188, 254
BsiSI	CCGG	3 cut(s)	92, 364, 368
BslI	CCNNNNNNNGG	3 cut(s)	230, 382, 835
BsmAI	GTCTC	2 cut(s)	110, 746
BsnI	GGCC	3 cut(s)	10, 206, 367
BsoBI	CYCGRG	2 cut(s)	188, 254
Bsp1286I	GDGCHC	2 cut(s)	189, 321
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	4 cut(s)	139, 511, 707, 803
BspANI	GGCC	3 cut(s)	10, 206, 367
BspCNI	CTCAG	2 cut(s)	324, 540
BspLI	GGNNCC	2 cut(s)	207, 351
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	2 cut(s)	344, 357
BsrFI	RCCGGY	2 cut(s)	91, 363
BssAI	RCCGGY	2 cut(s)	91, 363
BssMI	GATC	1 cut(s)	349
BssNAI	GTATAC	1 cut(s)	55
Bst1107I	GTATAC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	237, 830
Bst4CI	ACNGT	3 cut(s)	612, 653, 704
BstDEI	CTNAG	2 cut(s)	332, 548
BstEII	GGTNACC	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	110, 746
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 95
BstNI	CCWGG	2 cut(s)	237, 830
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	235, 828
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	6 cut(s)	95, 98, 107, 467, 522, 544
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	10, 206, 367
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 709
BveI	ACCTGC	1 cut(s)	449
Cfr10I	RCCGGY	2 cut(s)	91, 363
Cfr13I	GGNCC	2 cut(s)	205, 233
CsiI	ACCWGGT	1 cut(s)	235
CviAII	CATG	2 cut(s)	526, 740
DdeI	CTNAG	2 cut(s)	332, 548
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	233
Eco52I	CGGCCG	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	188, 254
Eco91I	GGTNACC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	235, 828
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	2 cut(s)	529, 743
FatI	CATG	2 cut(s)	525, 739
FauNDI	CATATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	7 cut(s)	84, 87, 96, 456, 533, 536, 804
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	7 cut(s)	84, 87, 96, 456, 533, 536, 804
FspBI	CTAG	1 cut(s)	690
GluI	GCNGC	7 cut(s)	84, 87, 96, 456, 533, 536, 804
GsaI	CCCAGC	2 cut(s)	212, 426
HaeIII	GGCC	3 cut(s)	10, 206, 367
HapII	CCGG	3 cut(s)	92, 364, 368
Hin1II	CATG	2 cut(s)	529, 743
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	261
HpaII	CCGG	3 cut(s)	92, 364, 368
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	55, 625, 670
Hpy188I	TCNGA	4 cut(s)	313, 498, 658, 697
Hpy188III	TCNNGA	4 cut(s)	256, 269, 331, 817
Hpy8I	GTNNAC	3 cut(s)	55, 625, 670
HpyAV	CCTTC	4 cut(s)	16, 37, 163, 386
HpyCH4III	ACNGT	3 cut(s)	612, 653, 704
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	17, 455, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 95
HpyF3I	CTNAG	2 cut(s)	332, 548
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	529, 743
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	6 cut(s)	95, 98, 107, 467, 522, 544
MabI	ACCWGGT	1 cut(s)	235
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	173, 604
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	8 cut(s)	52, 83, 86, 89, 119, 173, 238, 349
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	189, 321
MluCI	AATT	7 cut(s)	180, 307, 325, 411, 468, 662, 679
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	61, 115, 184, 263, 327, 420, 760
MseI	TTAA	4 cut(s)	219, 414, 477, 507
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	3 cut(s)	92, 364, 368
MspR9I	CCNGG	2 cut(s)	237, 830
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	237, 830
MwoI	GCNNNNNNNGC	2 cut(s)	92, 95
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	529, 743
NlaIV	GGNNCC	2 cut(s)	207, 351
NmuCI	GTSAC	1 cut(s)	604
PaeR7I	CTCGAG	2 cut(s)	188, 254
PaqCI	CACCTGC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	835
PkrI	GCNGC	7 cut(s)	85, 88, 97, 457, 534, 537, 805
PshBI	ATTAAT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	235, 828
PspEI	GGTNACC	1 cut(s)	173
PspFI	CCCAGC	2 cut(s)	208, 422
PspGI	CCWGG	2 cut(s)	235, 828
PspN4I	GGNNCC	2 cut(s)	207, 351
PspPI	GGNCC	2 cut(s)	205, 233
PspXI	VCTCGAGB	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	219, 414, 477, 507
SatI	GCNGC	7 cut(s)	84, 87, 96, 456, 533, 536, 804
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	2 cut(s)	205, 233
ScrFI	CCNGG	2 cut(s)	237, 830
SduI	GDGCHC	2 cut(s)	189, 321
SexAI	ACCWGGT	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	453
Sfr274I	CTCGAG	2 cut(s)	188, 254
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	2 cut(s)	188, 254
SmlI	CTYRAG	3 cut(s)	188, 254, 796
SmoI	CTYRAG	3 cut(s)	188, 254, 796
Sse9I	AATT	7 cut(s)	180, 307, 325, 411, 468, 662, 679
SsiI	CCGC	4 cut(s)	139, 511, 707, 803
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	235, 828
TaaI	ACNGT	3 cut(s)	612, 653, 704
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	189, 255
TasI	AATT	7 cut(s)	180, 307, 325, 411, 468, 662, 679
TauI	GCSGC	1 cut(s)	806
Tru1I	TTAA	4 cut(s)	219, 414, 477, 507
Tru9I	TTAA	4 cut(s)	219, 414, 477, 507
TscAI	CASTG	2 cut(s)	24, 709
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	6 cut(s)	83, 86, 95, 455, 532, 535
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	4 cut(s)	168, 238, 368, 763
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	24, 709
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	2 cut(s)	307, 325
XhoI	CTCGAG	2 cut(s)	188, 254
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.