Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

273843 .. 274452

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGCGTCATCGAGGAACCTGTAACTCGAGATTTACCTGTCAAGTTACTGATTATAATTGGGATATATGTAGGTCTCTCTGATAGTTTAGAGAAGTTGGTTGACATAGATAAGTACGTTATTTCTGCTGGGGCCGATGATCAGGATCTTGTTTTTGTGGTGGGTGTAATGGCCCATGAAAAATCAGTAAGGAGTACGCAGATGATTTTATATCAGTGTCGAATTATTGAATGGGAAGCGAAAGACAGCATAGCATTCATTTACGAGGCAATGGAGTGGACGATCGGTATCTATCTTAGGTTTATAAATAGTTATACCTTGCAAATTGATCCCAATGCGTCAAACAAGTACGAGTCACCAACCGAAGAAAGAAAACCAGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

129

Amino Acids

14.64

Weight (kDa)

4.66

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	56, 305
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	2 cut(s)	153, 323
AfaI	GTAC	3 cut(s)	116, 196, 350
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	153, 323
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	132, 171
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	132, 172
AsuHPI	GGTGA	1 cut(s)	348
AvaI	CYCGRG	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	132, 172
BmiI	GGNNCC	2 cut(s)	18, 133
BmrFI	CCNGG	1 cut(s)	378
BsaBI	GATNNNNATC	2 cut(s)	144, 287
BsaI	GGTCTC	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	2 cut(s)	144, 287
BseBI	CCWGG	1 cut(s)	378
BseJI	GATNNNNATC	2 cut(s)	144, 287
BseMI	GCAATG	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	134, 173
BsiEI	CGRYCG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	134, 173
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	139, 145, 282, 328
BspANI	GGCC	2 cut(s)	134, 173
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	18, 133
BspPI	GGATC	2 cut(s)	153, 323
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	276
BssMI	GATC	4 cut(s)	139, 145, 282, 328
Bst2UI	CCWGG	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	142, 148, 285, 331
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	139, 145, 282, 328
BstMCI	CGRYCG	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	134, 173
BtsIMutI	CAGTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	132, 172
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	115, 195, 349
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	2 cut(s)	134, 173
CviKI_1	RGCY	2 cut(s)	134, 173
CviQI	GTAC	3 cut(s)	115, 195, 349
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	4 cut(s)	141, 147, 284, 330
DpnII	GATC	4 cut(s)	139, 145, 282, 328
Eco31I	GGTCTC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	376
FaeI	CATG	1 cut(s)	179
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	139
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	134, 173
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	353
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	103, 279
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	29, 143
Hpy8I	GTNNAC	2 cut(s)	103, 279
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	139, 145, 282, 328
LpnPI	CCDG	5 cut(s)	33, 51, 114, 128, 363
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	22, 45, 354
MalI	GATC	4 cut(s)	141, 147, 284, 330
MboI	GATC	4 cut(s)	139, 145, 282, 328
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	3 cut(s)	57, 222, 324
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	2 cut(s)	7, 259
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	6
NdeII	GATC	4 cut(s)	139, 145, 282, 328
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	18, 133
NmuCI	GTSAC	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	27
PctI	GAATGC	1 cut(s)	254
Ple19I	CGATCG	1 cut(s)	285
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PsiI	TTATAA	2 cut(s)	56, 305
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	18, 133
PspPI	GGNCC	2 cut(s)	132, 172
PsuI	RGATCY	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	285
RsaI	GTAC	3 cut(s)	116, 196, 350
RsaNI	GTAC	3 cut(s)	115, 195, 349
Sau3AI	GATC	4 cut(s)	139, 145, 282, 328
Sau96I	GGNCC	2 cut(s)	132, 172
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	6 cut(s)	22, 40, 76, 120, 302, 320
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	57, 222, 324
StyD4I	CCNGG	1 cut(s)	376
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	12, 28, 220
TasI	AATT	3 cut(s)	57, 222, 324
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	192, 247
TspRI	CASTG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.