Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

49530254 .. 49537007

Gene Structure 6754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACGCAGATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGTGGCATTTTGTGATCTGCAGGCTCTCCACATGGTTTTAGATAGCCCGATTAATAAAGCTGGGAAGTTGCAATGTGTGTATATGAAGACCGAGGATGGTAAACTTATTGAGATTAAACCATATGTTCGTATCCCAAGGACATTTAAGCTATTCTCTGGTGTCATGTTGGTTACTGGCCGGCCTTTGGAAACCTTCACTGGTATTAAGGACTTTCTTTGGAAAGAACATAGTTTGGGTCATAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

9.77

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	53 - 101	4e-17	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	15
AdeI	CACNNNGTG	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	25, 29, 53, 197, 286
AluI	AGCT	5 cut(s)	25, 29, 53, 197, 286
AoxI	GGCC	2 cut(s)	313, 317
ApeKI	GCWGC	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	4, 118, 227
BciVI	GTATCC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	54, 155
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmtI	GCTAGC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	45, 228, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	316, 340
Bse3DI	GCAATG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	45, 228, 272
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	215
BseNI	ACTGG	2 cut(s)	316, 340
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	86, 197
BshFI	GGCC	2 cut(s)	315, 319
BsiSI	CCGG	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	322
BsnI	GGCC	2 cut(s)	315, 319
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	315, 319
BspMAI	CTGCAG	2 cut(s)	58, 159
BspOI	GCTAGC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	316, 340
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	45, 228, 272
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	45, 272
Bst4CI	ACNGT	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	23, 27, 159, 317
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstSFI	CTRYAG	2 cut(s)	54, 155
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	315, 319
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	23, 27, 159, 317
Cfr10I	RCCGGY	1 cut(s)	315
CseI	GACGC	1 cut(s)	13
CviAII	CATG	2 cut(s)	169, 301
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	45, 272
Eco57I	CTGAAG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	45, 272
ErhI	CCWWGG	2 cut(s)	45, 272
FaeI	CATG	2 cut(s)	172, 304
FaiI	YATR	8 cut(s)	170, 219, 221, 259, 261, 302, 366, 378
FatI	CATG	2 cut(s)	168, 300
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	245
FseI	GGCCGGCC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	2 cut(s)	90, 201
HaeIII	GGCC	2 cut(s)	315, 319
HapII	CCGG	1 cut(s)	316
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	172, 304
HpaII	CCGG	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	56, 157, 208
Hsp92II	CATG	2 cut(s)	172, 304
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	235
MnlI	CCTC	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	315
MseI	TTAA	4 cut(s)	189, 252, 282, 342
MspI	CCGG	1 cut(s)	316
NaeI	GCCGGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	1 cut(s)	151
NgoMIV	GCCGGC	1 cut(s)	315
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	172, 304
PdiI	GCCGGC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	86, 197
PstI	CTGCAG	2 cut(s)	58, 159
RigI	GGCCGGCC	1 cut(s)	319
SaqAI	TTAA	4 cut(s)	189, 252, 282, 342
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	151
SetI	ASST	7 cut(s)	27, 31, 55, 70, 199, 288, 332
SfcI	CTRYAG	2 cut(s)	54, 155
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	45, 272
TaaI	ACNGT	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	242
Tru1I	TTAA	4 cut(s)	189, 252, 282, 342
Tru9I	TTAA	4 cut(s)	189, 252, 282, 342
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	340
VspI	ATTAAT	1 cut(s)	189
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.