Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

319686 .. 321675

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAAAGCGGAAGAGGGAAGACAATTCTACAATAAGTACAATGGAGTTGAACTTATTGAACAACAACAAAAAACAAGTTCACGATCATCAGCCGAATACGATGAAGTCCCGCCCAATAATATTCATTCTGCGAAACGCTTCTCTCACAAAGGGTTTCGTCCATAAGAGGTGGAAGATTCTGGATTCGGATGACGACCATGATTTTCTTCTCAAGCAGAACAAGAATCTGGATGATTTTAGGCCTGCAATAGTTTACCAGGCTCTCCGTGAGATATTGGATAGCAAACTGAATAAAGCTGGTCTCTCTTATAGTGCAGAGAAGTTGGTTGACATAGATAAGTGTGTTAATTCTGCCGGTGTTGATGATCAGGGTCTTGTTTTTGTGGTGGGTGCAATGGCCCATGGAAAAATCAATGAGGAGTACGCAGATGATTTCATATCAGTGTCGAATTATCGATTGGAATCGAAAACCTGCATAGCATTGATTTGCGAGGCGTTGGAGTATAAATGGAAGTCTATATTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

177

Amino Acids

20.09

Weight (kDa)

7.71

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	2 cut(s)	10, 112
AfaI	GTAC	2 cut(s)	40, 425
AgsI	TTSAA	2 cut(s)	52, 61
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	242, 399
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	196, 238
BseJI	GATNNNNATC	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	244, 401
BshVI	ATCGAT	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	244, 401
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	85, 367
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	2 cut(s)	10, 112
BspANI	GGCC	2 cut(s)	244, 401
BspDI	ATCGAT	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	85, 367
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	196, 238
BstKTI	GATC	2 cut(s)	88, 370
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	85, 367
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	244, 401
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	196, 238
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	39, 424
CviAII	CATG	2 cut(s)	200, 404
CviJI	RGCY	5 cut(s)	94, 244, 263, 299, 401
CviKI_1	RGCY	5 cut(s)	94, 244, 263, 299, 401
CviQI	GTAC	2 cut(s)	39, 424
DpnI	GATC	2 cut(s)	87, 369
DpnII	GATC	2 cut(s)	85, 367
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	2 cut(s)	203, 407
FaiI	YATR	9 cut(s)	165, 201, 312, 335, 405, 440, 479, 507, 521
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	199, 403
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	2 cut(s)	203, 245
HaeIII	GGCC	2 cut(s)	244, 401
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	2 cut(s)	203, 407
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	178, 185, 226, 464
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	3 cut(s)	82, 256, 331
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	83, 182, 230
Hpy8I	GTNNAC	3 cut(s)	82, 256, 331
HpyCH4V	TGCA	4 cut(s)	248, 317, 395, 477
Hsp92II	CATG	2 cut(s)	203, 407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	85, 367
LpnPI	CCDG	9 cut(s)	167, 215, 245, 258, 272, 285, 356, 370, 487
MalI	GATC	2 cut(s)	87, 369
MboI	GATC	2 cut(s)	85, 367
MboII	GAAGA	4 cut(s)	25, 32, 187, 200
MluCI	AATT	3 cut(s)	25, 349, 451
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	4 cut(s)	9, 162, 412, 487
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	2 cut(s)	348, 529
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	2 cut(s)	85, 367
NlaIII	CATG	2 cut(s)	203, 407
PceI	AGGCCT	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	178, 185, 226, 464
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	400
RsaI	GTAC	2 cut(s)	40, 425
RsaNI	GTAC	2 cut(s)	39, 424
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	348, 529
Sau3AI	GATC	2 cut(s)	85, 367
Sau96I	GGNCC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	4 cut(s)	173, 301, 476, 529
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	25, 349, 451
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	2 cut(s)	10, 112
SspI	AATATT	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	403
TaqI	TCGA	3 cut(s)	449, 457, 467
TasI	AATT	3 cut(s)	25, 349, 451
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	4 cut(s)	178, 185, 226, 464
Tru1I	TTAA	2 cut(s)	348, 529
Tru9I	TTAA	2 cut(s)	348, 529
TscAI	CASTG	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	115, 119, 427
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.