Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

7583941 .. 7588608

Gene Structure 4668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G040700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGAGGCCATATGCAGTGAAGGGAAAGAAGCGAAGGAAGAGGGAAGATAAATATGAAAGAGTAGAAGAAGCAGAAGAAGCGTCAGAACCAGAAGAAACAGAGGCTTCACAGCCAGAGGACGTTAACAAGGGAGCTATGGTTGAGAAACAGAGTAATGGAAACGAAGGAGAAGAAAAAGTGGGTAACTCAATTGAACTTGAGGGTATTCCAATAACCCCAGTAGAACTTAGCACCAAGAACGGACCTGGGGCCATCTTCATCCTTGAGAGAGCTTCTTTGGAAGTTGCCAAAGTTGGAAAGACTTATCAGCTACTGAATTCTGATGATCACTCAAATTTCTTGCGGAAGAACAACAGAGATCCTGCTCTTTACAGGCCCGATATCGTTCATCAGGCTCTCCTTATGGTTTTGGATAGCCCAATTAATAAAGCTGGGAAGTTGCGAAATGTGTATGTGAGAACTGCAGCAGGTGTTCTTATTGAAATTAAGCCACATGTTCGTATCCCAAGGACATTTAAGCGGTTCTGTGGTGTCATGTTGCAACTGCTACAAAAACTGAGTATTTCTGCTGTTGGTAAGCGTGAGAAACTTATGCGTGTGATAAAGAACCCTGTGACACAGTATTTACCTGTCAACTCTCGCAAAATAGGCTTCTCGTACAGTTCGGAAAAATTAGTTAGCATACACAATTATGTTGCTGCTGCTGAAAACAATAGAGACTTTGTTTTTGTGGTTGGTGCGATGGCTCATGGAAAAGTGGAGACAGACTATACTGATGATTTTATATCAATCTCTGGTTATCCCTTGAGTGCTGCATTTTGTATTTCGATGATTTGCCAAGCATTGGCGGGAAAGTGGGATATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

291

Amino Acids

32.42

Weight (kDa)

8.92

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	847
AciI	CCGC	3 cut(s)	346, 523, 851
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	319, 337
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	847
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	197, 485
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	4 cut(s)	137, 275, 313, 434
AluI	AGCT	4 cut(s)	137, 275, 313, 434
Alw26I	GTCTC	2 cut(s)	714, 758
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	3 cut(s)	8, 252, 377
ApeKI	GCWGC	4 cut(s)	467, 701, 704, 815
ApoI	RAATTY	2 cut(s)	319, 337
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AseI	ATTAAT	1 cut(s)	426
AspS9I	GGNCC	3 cut(s)	245, 252, 378
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	479, 688, 691, 802
BccI	CCATC	2 cut(s)	263, 739
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	714, 758
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	4 cut(s)	468, 702, 705, 816
BlsI	GCNGC	4 cut(s)	469, 703, 706, 817
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	245, 252, 378
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BpuEI	CTTGAG	3 cut(s)	221, 287, 829
BsaJI	CCNNGG	2 cut(s)	248, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	847
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	248, 509
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	847
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	479, 688, 691, 802
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	3 cut(s)	10, 254, 379
BslI	CCNNNNNNNGG	1 cut(s)	847
BsmAI	GTCTC	2 cut(s)	714, 758
BsnI	GGCC	3 cut(s)	10, 254, 379
Bsp143I	GATC	2 cut(s)	328, 361
BspACI	CCGC	3 cut(s)	346, 523, 851
BspANI	GGCC	3 cut(s)	10, 254, 379
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	248, 509
BssMI	GATC	2 cut(s)	328, 361
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	624, 665
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	230, 560
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	331, 364
BstMAI	GTCTC	2 cut(s)	714, 758
BstMBI	GATC	2 cut(s)	328, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 651
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	479, 688, 691, 802
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	3 cut(s)	10, 254, 379
BtgZI	GCGATG	1 cut(s)	758
BtsCI	GGATG	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	245, 252, 378
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	3 cut(s)	497, 538, 752
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	230, 560
DpnI	GATC	2 cut(s)	330, 363
DpnII	GATC	2 cut(s)	328, 361
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	509
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	3 cut(s)	500, 541, 755
FatI	CATG	3 cut(s)	496, 537, 751
FauI	CCCGC	1 cut(s)	844
FauNDI	CATATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	468, 702, 705, 816
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	4 cut(s)	468, 702, 705, 816
GluI	GCNGC	4 cut(s)	468, 702, 705, 816
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	10, 254, 379
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	500, 541, 755
HincII	GTYRAC	2 cut(s)	127, 637
HindII	GTYRAC	2 cut(s)	127, 637
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	127, 637
Hpy188I	TCNGA	3 cut(s)	88, 325, 670
Hpy8I	GTNNAC	2 cut(s)	127, 637
HpyAV	CCTTC	3 cut(s)	16, 30, 161
HpyCH4III	ACNGT	2 cut(s)	624, 665
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	17, 467, 544, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 651
HpyF3I	CTNAG	2 cut(s)	230, 560
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	500, 541, 755
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	328, 361
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	4 cut(s)	479, 688, 691, 802
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	185, 616
MalI	GATC	2 cut(s)	330, 363
MboI	GATC	2 cut(s)	328, 361
MboII	GAAGA	8 cut(s)	52, 59, 80, 89, 107, 185, 250, 361
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	7 cut(s)	192, 319, 337, 423, 486, 674, 691
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	36, 97, 112, 196
MseI	TTAA	4 cut(s)	126, 426, 489, 519
MslI	CAYNNNNRTG	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	80, 651
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	2 cut(s)	328, 361
NlaIII	CATG	3 cut(s)	500, 541, 755
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	500
PaqCI	CACCTGC	1 cut(s)	461
PciI	ACATGT	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	847
PkrI	GCNGC	4 cut(s)	469, 703, 706, 817
PscI	ACATGT	1 cut(s)	496
PshBI	ATTAAT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	3 cut(s)	245, 252, 378
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	126, 426, 489, 519
SatI	GCNGC	4 cut(s)	468, 702, 705, 816
Sau3AI	GATC	2 cut(s)	328, 361
Sau96I	GGNCC	3 cut(s)	245, 252, 378
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	8 cut(s)	126, 139, 250, 277, 315, 436, 475, 634
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	3 cut(s)	200, 266, 808
SmoI	CTYRAG	3 cut(s)	200, 266, 808
Sse9I	AATT	7 cut(s)	192, 319, 337, 423, 486, 674, 691
SsiI	CCGC	3 cut(s)	346, 523, 851
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	624, 665
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	830
TasI	AATT	7 cut(s)	192, 319, 337, 423, 486, 674, 691
Tru1I	TTAA	4 cut(s)	126, 426, 489, 519
Tru9I	TTAA	4 cut(s)	126, 426, 489, 519
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	4 cut(s)	467, 701, 704, 815
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	3 cut(s)	72, 250, 380
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	2 cut(s)	319, 337
XceI	RCATGY	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.