Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

4993358 .. 4997162

Gene Structure 3805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCAGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGCTCTCCTCCTGGTTTTAGATAGCCCCATTAATAAAGCTGGGAAGTTGCGATGTGTGTATATGAAGACTGAGGATGGTAAACTTATTGAGATTAAACCACATGTTTGTATCCCAAGGACGTTTAAGCGGTTCTCTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGCCGTTGGTAAGCGTGAGAAACTTATGCGTATGATCAAGAACCCTGTGACACAGTATTTACCTGTTAACTCCTGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

128

Amino Acids

13.89

Weight (kDa)

10.18

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	42 - 125	1.1e-31	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	6
AflIII	ACRYGT	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	138, 374
AluBI	AGCT	6 cut(s)	16, 20, 44, 131, 167, 280
AluI	AGCT	6 cut(s)	16, 20, 44, 131, 167, 280
AlwNI	CAGNNNCTG	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	44, 277, 280
AseI	ATTAAT	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	31, 267, 289
BccI	CCATC	2 cut(s)	109, 197
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	140, 376
BciVI	GTATCC	1 cut(s)	248
BclI	TGATCA	1 cut(s)	336
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	45, 284
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	45, 278, 281
BlsI	GCNGC	3 cut(s)	46, 279, 282
Bme1390I	CCNGG	2 cut(s)	140, 376
BmrFI	CCNGG	2 cut(s)	140, 376
BmtI	GCTAGC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	36, 242
BseBI	CCWGG	2 cut(s)	140, 376
BseDI	CCNNGG	2 cut(s)	36, 242
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	189, 284
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	31, 267, 289
BseYI	CCCAGC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	190, 285
BspMAI	CTGCAG	1 cut(s)	49
BspOI	GCTAGC	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	36, 242
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	36, 242
Bst2UI	CCWGG	2 cut(s)	140, 376
Bst4CI	ACNGT	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	14, 18
BstDEI	CTNAG	2 cut(s)	198, 293
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstNI	CCWGG	2 cut(s)	140, 376
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	138, 374
BstSFI	CTRYAG	2 cut(s)	45, 284
BstV1I	GCAGC	3 cut(s)	31, 267, 289
BstV2I	GAAGAC	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	14, 18
CaiI	CAGNNNCTG	1 cut(s)	292
CviAII	CATG	2 cut(s)	230, 271
CviJI	RGCY	8 cut(s)	16, 20, 26, 44, 131, 153, 167, 280
CviKI_1	RGCY	8 cut(s)	16, 20, 26, 44, 131, 153, 167, 280
DdeI	CTNAG	2 cut(s)	198, 293
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	36, 242
Eco57I	CTGAAG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	138, 374
EcoT14I	CCWWGG	2 cut(s)	36, 242
ErhI	CCWWGG	2 cut(s)	36, 242
FaeI	CATG	2 cut(s)	233, 274
FaiI	YATR	7 cut(s)	189, 191, 231, 272, 299, 329, 335
FatI	CATG	2 cut(s)	229, 270
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	45, 278, 281
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	45, 278, 281
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	45, 278, 281
GsaI	CCCAGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	233, 274
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HpaI	GTTAAC	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	209, 370
Hpy188III	TCNNGA	2 cut(s)	108, 340
Hpy8I	GTNNAC	2 cut(s)	209, 370
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	47, 277
HpyF3I	CTNAG	2 cut(s)	198, 293
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	233, 274
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	31, 267, 289
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	205
MnlI	CCTC	2 cut(s)	146, 193
MseI	TTAA	4 cut(s)	159, 222, 252, 369
MspA1I	CMGCKG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	140, 376
MvaI	CCWGG	2 cut(s)	140, 376
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	233, 274
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	233
PciI	ACATGT	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	46, 279, 282
PscI	ACATGT	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	138, 374
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	138, 374
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	280
SaqAI	TTAA	4 cut(s)	159, 222, 252, 369
SatI	GCNGC	3 cut(s)	45, 278, 281
Sau3AI	GATC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	140, 376
SetI	ASST	9 cut(s)	18, 22, 46, 61, 133, 169, 251, 282, 367
SfcI	CTRYAG	2 cut(s)	45, 284
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	138, 374
StyI	CCWWGG	2 cut(s)	36, 242
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	159, 222, 252, 369
Tru9I	TTAA	4 cut(s)	159, 222, 252, 369
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	44, 277, 280
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	159
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.