Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

5336368 .. 5336947

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCGCAGATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGGTCAGTGGTCCTTGCATTGTATTCTTAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

57

Amino Acids

5.77

Weight (kDa)

9.36

Isoelectric Point (pI)

13.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	25, 29, 53
AluI	AGCT	3 cut(s)	25, 29, 53
ApeKI	GCWGC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	147
AsuNHI	GCTAGC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	4, 118
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	23, 27
BstDEI	CTNAG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	23, 27
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	147
CviJI	RGCY	5 cut(s)	25, 29, 35, 53, 86
CviKI_1	RGCY	5 cut(s)	25, 29, 35, 53, 86
DdeI	CTNAG	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
Hpy188III	TCNNGA	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	56, 154
HpyF3I	CTNAG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	42, 51, 72, 96, 102
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	58
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	5 cut(s)	27, 31, 55, 70, 142
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	45
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	147
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.