Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

7599674 .. 7602626

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGAGGGCGTATGCAGTGAAGGGAAAGAAGCGAAAGAAGAAGGCAGATGTATACGACAGAGCAGAGGAAGAAGAAGAAGCAGCAGCAGCAGCGGCAGCAGAACCAGAAGAAACAGAGACAGAGGAAGCCGATAAGAAACGGAGCAAAGGAAATGAAGCAGAAGAAAGGAAGGGTAACCCAATTGAGCTCGAGGGTATTCCAATGGCCCCAGCAGAGATTAACCCCAAGAACGGACCTGGTGCTATCTTCATCCTCGAGAAAGCTTCTCTGGAAGTTGCCAAAGTTGGAAAGACTTATCAGCTATTGAATTCTGACGAGCACTCAAATTTCCTGAGGAAGAACAACAAGGATCCTGCTCTTTACCGGCCTGATATCCTTCATCAGGCTCTCCTTATGGTTTTAGATAGCCCAATTAATAAAGCTGGGAGGTTGCGGAACGTGTATGTGAGAACTGCTGCAGGTGTTCTAATTGAAGTTAAGCCATATGTTCGTATTCCGAGAACATTTAAGCGGTTCGCTGGTGTCATGTTGCAGCTGCTACAAAAACTGAGTATATCTGCTGTTGGTAAGCGTGAGAAACTTATGCGTGTGATAAAGAACCCTGTGACACAGTATTTACCTGTCAACTCTCGTAAAATAGGCTTCTCATACAGTTCAGAAAAATTGGTTAACATACAGAAGTATGTTGCTAGTGATGAAAACAGTACGGACTTTGTTTTTGTGGTTGGTGCGATGGCTCATGGGAAAGTTGAGACAGACTATACTGAGGATTTCATTTCAATATCTGGTTATCCCTTGAGTGCGGCATATTGTATCACGATGATTTGCCAGGCATTAGCGGGAAAGTGGAACATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

288

Amino Acids

31.97

Weight (kDa)

9.14

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	5 cut(s)	95, 436, 514, 806, 842
AclWI	GGATC	2 cut(s)	347, 360
AcsI	RAATTY	2 cut(s)	310, 328
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	2 cut(s)	233, 385
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	310, 476, 783
AjnI	CCWGG	2 cut(s)	238, 831
AluBI	AGCT	5 cut(s)	190, 266, 304, 425, 538
AluI	AGCT	5 cut(s)	190, 266, 304, 425, 538
Alw21I	GWGCWC	2 cut(s)	192, 324
Alw26I	GTCTC	2 cut(s)	113, 749
AlwI	GGATC	2 cut(s)	347, 360
Ama87I	CYCGRG	2 cut(s)	191, 257
AoxI	GGCC	2 cut(s)	207, 368
ApeKI	GCWGC	8 cut(s)	83, 86, 89, 92, 98, 458, 535, 538
ApoI	RAATTY	2 cut(s)	310, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	208, 236
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	191, 257
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	192, 324
BbvI	GCAGC	8 cut(s)	95, 98, 101, 104, 110, 445, 525, 547
BccI	CCATC	1 cut(s)	730
BciT130I	CCWGG	2 cut(s)	240, 833
BcoDI	GTCTC	2 cut(s)	113, 749
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	240, 833
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	2 cut(s)	191, 257
BmgT120I	GGNCC	2 cut(s)	208, 236
BmiI	GGNNCC	2 cut(s)	210, 354
BmrFI	CCNGG	2 cut(s)	240, 833
BpuEI	CTTGAG	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 385
Bse118I	RCCGGY	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	240, 833
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	233, 385
BseMII	CTCAG	3 cut(s)	326, 542, 759
BseXI	GCAGC	8 cut(s)	95, 98, 101, 104, 110, 445, 525, 547
BseYI	CCCAGC	2 cut(s)	211, 425
BshFI	GGCC	2 cut(s)	209, 370
BsiHKAI	GWGCWC	2 cut(s)	192, 324
BsiHKCI	CYCGRG	2 cut(s)	191, 257
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	233, 385
BsmAI	GTCTC	2 cut(s)	113, 749
BsnI	GGCC	2 cut(s)	209, 370
BsoBI	CYCGRG	2 cut(s)	191, 257
Bsp1286I	GDGCHC	2 cut(s)	192, 324
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	5 cut(s)	95, 436, 514, 806, 842
BspANI	GGCC	2 cut(s)	209, 370
BspCNI	CTCAG	3 cut(s)	327, 543, 760
BspLI	GGNNCC	2 cut(s)	210, 354
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	347, 360
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssMI	GATC	1 cut(s)	352
BssNAI	GTATAC	1 cut(s)	55
Bst1107I	GTATAC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	240, 833
Bst4CI	ACNGT	3 cut(s)	615, 656, 707
BstDEI	CTNAG	3 cut(s)	335, 551, 768
BstEII	GGTNACC	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	113, 749
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 92, 95, 98
BstNI	CCWGG	2 cut(s)	240, 833
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	238, 831
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	8 cut(s)	95, 98, 101, 104, 110, 445, 525, 547
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZ17I	GTATAC	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	209, 370
BtgZI	GCGATG	1 cut(s)	749
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	208, 236
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	2 cut(s)	529, 743
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	3 cut(s)	335, 551, 768
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	335
Eco88I	CYCGRG	2 cut(s)	191, 257
Eco91I	GGTNACC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	238, 831
EcoRV	GATATC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	532, 746
FatI	CATG	2 cut(s)	528, 742
FauI	CCCGC	1 cut(s)	835
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	693
GsaI	CCCAGC	2 cut(s)	215, 429
HaeIII	GGCC	2 cut(s)	209, 370
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	2 cut(s)	532, 746
HincII	GTYRAC	2 cut(s)	628, 673
HindII	GTYRAC	2 cut(s)	628, 673
HindIII	AAGCTT	1 cut(s)	264
HpaI	GTTAAC	1 cut(s)	673
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	55, 628, 673
Hpy188I	TCNGA	3 cut(s)	316, 501, 661
Hpy188III	TCNNGA	4 cut(s)	259, 272, 334, 820
Hpy8I	GTNNAC	3 cut(s)	55, 628, 673
HpyAV	CCTTC	4 cut(s)	16, 37, 166, 389
HpyCH4III	ACNGT	3 cut(s)	615, 656, 707
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	17, 461, 535
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 92, 95, 98
HpyF3I	CTNAG	3 cut(s)	335, 551, 768
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	532, 746
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	8 cut(s)	95, 98, 101, 104, 110, 445, 525, 547
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	176, 607
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	8 cut(s)	52, 83, 86, 89, 122, 176, 241, 352
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	192, 324
MluCI	AATT	6 cut(s)	183, 310, 328, 414, 471, 665
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	61, 118, 187, 266, 330, 423, 763
MseI	TTAA	5 cut(s)	222, 417, 480, 510, 672
MspA1I	CMGCKG	2 cut(s)	95, 538
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	240, 833
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	240, 833
MwoI	GCNNNNNNNGC	4 cut(s)	89, 92, 95, 98
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	532, 746
NlaIV	GGNNCC	2 cut(s)	210, 354
NmuCI	GTSAC	1 cut(s)	607
PaeR7I	CTCGAG	2 cut(s)	191, 257
PaqCI	CACCTGC	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	238, 831
PspEI	GGTNACC	1 cut(s)	176
PspFI	CCCAGC	2 cut(s)	211, 425
PspGI	CCWGG	2 cut(s)	238, 831
PspN4I	GGNNCC	2 cut(s)	210, 354
PspPI	GGNCC	2 cut(s)	208, 236
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	222, 417, 480, 510, 672
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	208, 236
ScrFI	CCNGG	2 cut(s)	240, 833
SduI	GDGCHC	2 cut(s)	192, 324
SexAI	ACCWGGT	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	459
Sfr274I	CTCGAG	2 cut(s)	191, 257
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	2 cut(s)	191, 257
SmlI	CTYRAG	3 cut(s)	191, 257, 799
SmoI	CTYRAG	3 cut(s)	191, 257, 799
Sse9I	AATT	6 cut(s)	183, 310, 328, 414, 471, 665
SsiI	CCGC	5 cut(s)	95, 436, 514, 806, 842
SspMI	CTAG	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	238, 831
TaaI	ACNGT	3 cut(s)	615, 656, 707
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	192, 258
TasI	AATT	6 cut(s)	183, 310, 328, 414, 471, 665
TauI	GCSGC	2 cut(s)	98, 809
Tru1I	TTAA	5 cut(s)	222, 417, 480, 510, 672
Tru9I	TTAA	5 cut(s)	222, 417, 480, 510, 672
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	8 cut(s)	83, 86, 89, 92, 98, 458, 535, 538
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	5 cut(s)	171, 241, 371, 714, 766
TspGWI	ACGGA	3 cut(s)	157, 249, 725
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	310, 328
XhoI	CTCGAG	2 cut(s)	191, 257
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.