Rw4G005800

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
11741934 .. 11743140
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005800.1

Sequence Viewer

Length: 312 bp
ATGCTTCGTGTTGGTGTTGCAATTGAGAATATTTCATCGGTCTCAATCCCTATTGTTGGACTCCTACATCAGTACCACCAACAAATCCAGAGTCGGAAGGGAATGGCGCAGATGGGAAAAAGCGAGCTAGCTTCAGCAAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAATGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTAGTTCTGGAATGATGGAGTTTCACAAAGTGGCATTTTGTGATCTGCAGGCTCTCCACATGGTTTTAGATAGCCCAATTAATAAAGCTGGGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.79

Weight (kDa)

9.78

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 56
AluBI AGCT 4 cut(s) 127, 131, 155, 299
AluI AGCT 4 cut(s) 127, 131, 155, 299
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AseI ATTAAT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 106, 220
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 128, 213
BfmI CTRYAG 2 cut(s) 156, 257
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 2 cut(s) 188, 299
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 253
BspMAI CTGCAG 2 cut(s) 160, 261
BspOI GCTAGC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 125, 129, 261
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 156, 257
BstV1I GCAGC 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 125, 129, 261
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 271
CviJI RGCY 7 cut(s) 127, 131, 155, 188, 263, 285, 299
CviKI_1 RGCY 7 cut(s) 127, 131, 155, 188, 263, 285, 299
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DraIII CACNNNGTG 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 274
FaiI YATR 1 cut(s) 272
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 128, 213
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 2 cut(s) 192, 303
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 2 cut(s) 60, 91
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 88, 219
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 20, 158, 259
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 101, 144, 153, 174, 204, 245, 285
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 2 cut(s) 128, 213
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MfeI CAATTG 1 cut(s) 21
MluCI AATT 2 cut(s) 21, 288
MlyI GAGTC 2 cut(s) 54, 100
MmeI TCCRAC 2 cut(s) 37, 74
MseI TTAA 2 cut(s) 177, 291
MunI CAATTG 1 cut(s) 21
NdeII GATC 1 cut(s) 253
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 274
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 54, 99
PpsI GAGTC 2 cut(s) 54, 99
PshBI ATTAAT 1 cut(s) 291
PspFI CCCAGC 2 cut(s) 188, 299
PstI CTGCAG 2 cut(s) 160, 261
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 177, 291
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 2 cut(s) 54, 100
SetI ASST 5 cut(s) 129, 133, 157, 172, 301
SfcI CTRYAG 2 cut(s) 156, 257
Sse9I AATT 2 cut(s) 21, 288
SspI AATATT 1 cut(s) 31
SspMI CTAG 2 cut(s) 128, 213
StyI CCWWGG 1 cut(s) 147
TaqII GACCGA 1 cut(s) 28
TasI AATT 2 cut(s) 21, 288
Tru1I TTAA 2 cut(s) 177, 291
Tru9I TTAA 2 cut(s) 177, 291
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 24
VspI ATTAAT 1 cut(s) 291
XspI CTAG 2 cut(s) 128, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.