Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

48159930 .. 48180518

Gene Structure 20589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTATCCTCCAGGTGGAGTTTATGCTCATCCGGACTCCTACATCAGTACCACCAACAAATCTAGAGGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGCGAGCTAACTTCAGCCAAAAAACCCAAGGGAGCTACAGGAAATACAGGTTTGGTTAGTGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTAGTTCTGGAATGATGGAGTTTCACAAAGGACTCTCGTACAGTTCAGAGAAATTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATATGGACCTTGTCTTTGTGGTTGGTGCAATGGCTTATGGCAAAGTTGAGACAAACTATACTGATGATTTTGTATCAAGAGTATGGTGCAACCGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGATATGCTTATTGCATGTTCTGGCATATATTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

150

Amino Acids

16.11

Weight (kDa)

9.39

Isoelectric Point (pI)

20.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	49, 227
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	254, 448
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	103, 131, 393
AluI	AGCT	3 cut(s)	103, 131, 393
Alw26I	GTCTC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	266, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbvI	GCAGC	2 cut(s)	253, 256
BccI	CCATC	2 cut(s)	82, 196
BciT130I	CCWGG	1 cut(s)	12
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	63, 189
BfmI	CTRYAG	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	267, 270
BlsI	GCNGC	2 cut(s)	268, 271
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	253, 256
BseYI	CCCAGC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	230, 374
BstC8I	GCNNGC	2 cut(s)	101, 408
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	253, 256
BsuI	GTATCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	101, 408
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	48, 226
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	6 cut(s)	103, 113, 131, 164, 314, 393
CviKI_1	RGCY	6 cut(s)	103, 113, 131, 164, 314, 393
CviQI	GTAC	2 cut(s)	48, 226
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	432
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	267, 270
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	267, 270
FspBI	CTAG	2 cut(s)	63, 189
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	267, 270
GsaI	CCCAGC	1 cut(s)	168
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	35, 219
HpaII	CCGG	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	72, 235
Hpy188III	TCNNGA	4 cut(s)	32, 63, 195, 357
HpyAV	CCTTC	3 cut(s)	67, 72, 379
HpyCH4III	ACNGT	2 cut(s)	230, 374
HpyCH4V	TGCA	5 cut(s)	308, 369, 377, 410, 428
Hsp92II	CATG	1 cut(s)	432
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	24, 45, 120, 129, 150, 180, 420
Lsp1109I	GCAGC	2 cut(s)	253, 256
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	63, 189
MfeI	CAATTG	1 cut(s)	448
MluCI	AATT	2 cut(s)	239, 448
MlyI	GAGTC	2 cut(s)	29, 213
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	18, 59
MroI	TCCGGA	1 cut(s)	31
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	12
NlaIII	CATG	1 cut(s)	432
NspI	RCATGY	1 cut(s)	432
PctI	GAATGC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	268, 271
PleI	GAGTC	2 cut(s)	29, 213
PpsI	GAGTC	2 cut(s)	29, 213
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	2 cut(s)	49, 227
RsaNI	GTAC	2 cut(s)	48, 226
SatI	GCNGC	2 cut(s)	267, 270
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	29, 213
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	7 cut(s)	16, 70, 105, 133, 148, 291, 395
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	2 cut(s)	239, 448
SspMI	CTAG	2 cut(s)	63, 189
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	230, 374
TasI	AATT	2 cut(s)	239, 448
TseI	GCWGC	2 cut(s)	266, 269
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	62
XceI	RCATGY	1 cut(s)	432
XspI	CTAG	2 cut(s)	63, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.