Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

63400598 .. 63404367

Gene Structure 3770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTAGCGGCACGGCGGGCGGCGACACTCGATCTCCTTGACGGTGGACGACGAGTTCTCCTTAGTCCGGAGGGAGTTGGTATTGGTGGAGTTTATGCTCATCCGGACTCCTACATCAGTACCACCAACAAATCCAGAGGTCGGAAGGGAAGGGGGCATATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGTTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCAGGGAGAGTGGAAAAGCAACTTCTGGCTCTCCTCCTGGTTTTAGATAGCCCCATTAATAAAGCTGGGAAGTTGCGATGTGTGTATATGAAGACCGAGGATGGTAAACTAATTGAGATTAAACCATATGTTTGTATCCCAAGGACGTTTAAGCGGTTCTCTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGCCGTTGGTAAGCGTGAGAAACTTATGCGACTCTCGTACAGTTCAGAGAAATTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATATGGACCTTGTCTTTGTGGTTGGTGCAATGGCTTATGGCAAAGTTGAGACAAACTATACTGATGAATTTGTATCAAGTCAGTTGATTGCCAATTGTGTTCTTTTCTGCTTTGGATTTTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

217

Amino Acids

23.53

Weight (kDa)

9.84

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	88 - 199	4.1e-27	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	67, 103
AciI	CCGC	4 cut(s)	8, 16, 20, 388
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	121, 473
AfiI	CCNNNNNNNGG	2 cut(s)	67, 141
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	270
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	4 cut(s)	175, 179, 299, 412
AluI	AGCT	4 cut(s)	175, 179, 299, 412
Alw26I	GTCTC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	424
Aor13HI	TCCGGA	2 cut(s)	67, 103
ApeKI	GCWGC	4 cut(s)	409, 412, 512, 515
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	532
AsuNHI	GCTAGC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	532
BaeI	ACNNNNGTAYC	2 cut(s)	103, 136
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	399, 421, 499, 502
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	29, 422
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	6 cut(s)	9, 21, 410, 413, 513, 516
BlsI	GCNGC	6 cut(s)	10, 22, 411, 414, 514, 517
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	272
BmtI	GCTAGC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	195, 330, 374
BsaWI	WCCGGW	2 cut(s)	67, 103
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 42, 48, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 141
Bse3DI	GCAATG	1 cut(s)	561
BseAI	TCCGGA	2 cut(s)	67, 103
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	195, 330, 374
BseGI	GGATG	2 cut(s)	100, 340
BseLI	CCNNNNNNNGG	2 cut(s)	67, 141
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	399, 421, 499, 502
BseYI	CCCAGC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	68, 104
BslI	CCNNNNNNNGG	2 cut(s)	67, 141
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	495
Bsp13I	TCCGGA	2 cut(s)	67, 103
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	8, 16, 20, 388
BspCNI	CTCAG	1 cut(s)	417
BspEI	TCCGGA	2 cut(s)	67, 103
BspOI	GCTAGC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	561
BssECI	CCNNGG	3 cut(s)	195, 330, 374
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	195, 374
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	44, 476
BstC8I	GCNNGC	3 cut(s)	18, 173, 177
BstDEI	CTNAG	2 cut(s)	62, 425
BstF5I	GGATG	2 cut(s)	100, 340
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	399, 421, 499, 502
BstV2I	GAAGAC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	100, 340
Cac8I	GCNNGC	3 cut(s)	18, 173, 177
CaiI	CAGNNNCTG	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	120, 472
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	8 cut(s)	175, 179, 185, 263, 285, 299, 412, 560
CviKI_1	RGCY	8 cut(s)	175, 179, 185, 263, 285, 299, 412, 560
CviQI	GTAC	2 cut(s)	120, 472
DdeI	CTNAG	2 cut(s)	62, 425
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	195, 374
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	195, 374
ErhI	CCWWGG	2 cut(s)	195, 374
FaeI	CATG	1 cut(s)	406
FatI	CATG	1 cut(s)	402
FauI	CCCGC	1 cut(s)	9
FauNDI	CATATG	2 cut(s)	159, 361
Fnu4HI	GCNGC	6 cut(s)	9, 21, 410, 413, 513, 516
FokI	GGATG	2 cut(s)	87, 347
Fsp4HI	GCNGC	6 cut(s)	9, 21, 410, 413, 513, 516
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	6 cut(s)	9, 21, 410, 413, 513, 516
GsaI	CCCAGC	1 cut(s)	303
HapII	CCGG	2 cut(s)	68, 104
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	2 cut(s)	107, 465
HpaII	CCGG	2 cut(s)	68, 104
Hpy166II	GTNNAC	2 cut(s)	47, 341
Hpy188I	TCNGA	2 cut(s)	144, 481
Hpy188III	TCNNGA	3 cut(s)	68, 104, 135
Hpy8I	GTNNAC	2 cut(s)	47, 341
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	139, 144
HpyCH4III	ACNGT	2 cut(s)	44, 476
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	206, 409, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	62, 425
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	406
Kpn2I	TCCGGA	2 cut(s)	67, 103
Kzo9I	GATC	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	399, 421, 499, 502
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	380
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	619
MluCI	AATT	4 cut(s)	345, 485, 593, 619
MlyI	GAGTC	2 cut(s)	101, 459
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	64, 131, 278, 325
MroI	TCCGGA	2 cut(s)	67, 103
MseI	TTAA	3 cut(s)	291, 354, 384
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	2 cut(s)	68, 104
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	2 cut(s)	159, 361
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	406
PctI	GAATGC	1 cut(s)	495
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	10, 22, 411, 414, 514, 517
PleI	GAGTC	2 cut(s)	101, 459
PpsI	GAGTC	2 cut(s)	101, 459
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	2 cut(s)	121, 473
RsaNI	GTAC	2 cut(s)	120, 472
SaqAI	TTAA	3 cut(s)	291, 354, 384
SatI	GCNGC	6 cut(s)	9, 21, 410, 413, 513, 516
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	2 cut(s)	101, 459
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	8 cut(s)	142, 177, 181, 220, 301, 383, 414, 537
SfcI	CTRYAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	345, 485, 593, 619
SsiI	CCGC	4 cut(s)	8, 16, 20, 388
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	195, 374
TaaI	ACNGT	2 cut(s)	44, 476
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	4 cut(s)	345, 485, 593, 619
TauI	GCSGC	2 cut(s)	11, 23
Tru1I	TTAA	3 cut(s)	291, 354, 384
Tru9I	TTAA	3 cut(s)	291, 354, 384
TseI	GCWGC	4 cut(s)	409, 412, 512, 515
TspDTI	ATGAA	3 cut(s)	338, 606, 636
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	532
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	593
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.