Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

8002866 .. 8015950

Gene Structure 13085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3177 bp

ATGGAGAGAATACACGTCACTGTGCGGGCTCGGCCGCTCTCAGCCGACGACGCCAAAACCAGCCCTTGGCGTATTTCCGGCAACTCCATCTTCATCCCCAACTCCTCCTCCAAGTTCGAATTCGATCGGGTTTTCGGTGAAGACTGTAAGACTAGCGAGGTCTATCAGTCTCGGACCAAAGATTTAGTCGAGGCTGCTGTTCGCGGTTTCAATGGAACAGTGTTTGCTTATGGCCAAACTAATAGTGGAAAGACTTACACAATTCGTGGTTCGGCTACCGAGCCTGGAGTGATTCGACTCGCTGTGCGTGATATGTTCGACCTTATTCAACAGGATGTGGATCGGGAGTTTCTTCTGCGGATGTCTTATATGGAGATCTACAATGAGGAAATAAATGATTTATTGGCTCCCGAGCATCGAAAATTGCAGATCCATGAAAGTATAGAGCGGGGAATTTTTGTTGCTGGGTTGCGAGAAGAAATTGTTGCCTCTCCTGAGCAAGTCCTTGCTCTCATGGAGTTTGGAGAGTCCCATCGGCATATCGGAGAGACAAACATGAATGTGTACAGTAGTAGGTCCCACACTATTTTCCGCATGATAATAGAAAGTCGAGATAAAACTGAAGATGAAGACATTGGAAATTCGTGTGATGCTGTTCGTGTTTCAGTTTTGAATTTGGTGGACCTTGCTGGTTCAGAACGTGCTGCAAAAACAGGTGCAGAAGGTGTCCGACTCAAAGAGGGCTCTCATATCAATAAAAGCCTTATGACACTGGGAACTGTCATTAAAAAATTAAGTGAAGGTGCTGAGAGTCAAGGGGGACATGTACCATACAGAGATAGCAAACTTACACGTATTTTGCAGCCTGCTTTGGGTGGAAATGCAAATACAGCTATAATATGCAATATCACCCTTGCACAGATTCATACAGACGAGACTAAAAGCAGTCTCCAATTTGCAAGTAGAGCATTACGTGTCACAAACTGTGCTCATGTCAATGAGATTTTGACTGATGCGGCTCTTCTAAAGCGTCAAAAGAAGGAAATTGAGGAGCTTCGAGCAAAATTGCAGGATTCTCATTCAGAACATTGGACAGAGGAAATCCTCAATTTGCGGAACACATTGTTGCAGACTGAGTTAGAAAGGGAGCGTATAGCCTTGGAGTTGGAGGAGGAAAAGAAAGCCCAAGCTGAAAGAGAGAAGATGGTCCAACAACAAGCTAAGAAAATTGAAAATTTGAGTTCAATGGTTTTGTATTCAAATAGGGATGAGAATCGTGATCGCTTCAAGAAGAAGAGGCGGGATACTTGGTGTCCAGGTAATCTTGCCAAGGAGGCCCTTGGAGAGGTGCTATCCACCATTATATCAAAGGCATCTGCTGTAAAACCAATGAGACCCAAGCGTGACATGCAACTACTTCCTTTTGAAGAACTGGTGGATGAGACTGATGTTGCTCAGAACAAATCTTGCAAAGATGAAGAATATAAAAATAGTACAGTGGAGGACTGTACTCTTCCTGATCCATGTGCTTTATTACATGTTACTAGCAGAAGAAAAGTGCCACCCAGGACTAAAAGCTTATCACAGGACAATGAATTGTTACATTTGCAAGGAGAATATGAAGATTTGCTTATAGAATTTGAAAGTCAGAGAACGTGTAGTGAGATACAAATTGATTGCTTGACAAGGAAGCTTGCTGAGGCTGATATGTTTTCTGTTGAAATGTGCAATGACTACTCCACATCTTGTGCCTATAAGGGTAAAATTGATGGGGATAAGAATGTTAGCTTAAGAGAGTCAGAAGCTATTCTTGTGATTAAGCGACTTCAAGAACAGATTAAGAGGTTAGAAATGGAGATGTCTTCAAGCCAGCAAAATCTGGATTCTGTTGTTGAGCTGGCAAAAGAGCAAAACATATGTGCTATGGAGAAGTATGGTGAGCTCCATGAGGAACTTCTGATCGCACAAGAGGAGTCCAGGGTTGCCCGTGGACAACATACTTGCAACGAGTCTGTAACGCAGGAAGATTACAAAAAGATGGAAGTTTACGCTGTTGAAAAGGACGCACAGATTATTTCTCTAGAAAAAGAATTAGAAGCTTTATCCAGGGAAAAGGAAGGTGCTCTATCTAGTAATGACGGTTTACATTCTGAAATAAAATCCCTGTCTGAAATGTTGAACATCTCACACTCTGAAGTCAACAAATTGCAACAAGAGCTTTTGGCCCTGAGGAATAGGTTGGAAGAATCTAAACTCGAGCAGCGAAAGATGGAAAACTCCATTAAAATGTTGGCTGAAGAAAAGGAAGAGTTGGCACTGAAACTTACAGATTCCCTTTTGGAAATGGAGGAGGAAAGGGTAATATGGTCTTCGAAGGAGAAGGCTTCAATTGAAGCCATAGAAGATAAAGCAAAGTTATACAAGAGGGAGATTGCATCATTCTCAAAGGAAATGTTAGGGGTGAGGAATGAATTGGAGTCTTGTAGACAAGAATGCAAGGGACTTAGGGAAAGATTAACTTCTTACGAGGAAACGACAGGACAGAAGACATGCAGCCTGGAGAAGTCTTTGGATGTTGATCAACTGCATAATCACCAAGATATATCTGATTCTCCAAGAAAACTGTCTCAAGAACTGTTGAACTCAAATCTGGAGATATGTAAAATTGATGATTTCAAGGAGGTGAATTTGCTTCAGAAGGAGCTGAGTTTTCTTAAAACAGAAAGAGAAGATCTGTTACTTCAAATGCGAGAGTTATCAAAACTTCCTAATGACTTAGAGAATCTCAACAACCAGCTCCTTCTTGTGAAAAAAGAAAAGGATAGATTAGTTACTCAGATTCAAGAGCAGAAGAAACATGTAACAGAAGAACAAATTCGCCATAAACGTAACAATGACTTGTTAGTGGAGGACCTGACAAGAAGAATTTCAAGCATGGAACTCAAGATGCACAATGATCAAGTCGAAAACAGCAAGGAAAAGGCAAAGCTTCGAATGAGGCTTCGAGGGACTCAAGCAAAATCAGATGCCTTTTGCTATAGATACAAGGAAGCAGAAGCCGAGATCAATCTTATGGACAGAAAATACAAGGAGGCTACAGACGACCTAAAGGATCGCTTAGCGTTAAAAGGAGTTGAGGTCCTCAACCTCAAGAAGGAGCTTGCTGCAAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

1058

Amino Acids

121.3

Weight (kDa)

5.51

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	34 - 324	3e-105	Kinesin motor domain
Microtub_bd	PF16796	34 - 135	5.2e-21	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccBSI	CCGCTC	2 cut(s)	37, 448
AccI	GTMKAC	1 cut(s)	2485
AccII	CGCG	1 cut(s)	204
AciI	CCGC	9 cut(s)	25, 35, 204, 358, 448, 592, 1016, 1114, 1300
AclWI	GGATC	4 cut(s)	348, 424, 1514, 3120
AcoI	YGGCCR	2 cut(s)	32, 232
AcsI	RAATTY	9 cut(s)	119, 453, 640, 673, 1234, 1637, 2686, 2874, 2925
AcuI	CTGAAG	4 cut(s)	642, 2214, 2316, 2678
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	4 cut(s)	566, 828, 1495, 1510
AfiI	CCNNNNNNNGG	4 cut(s)	66, 872, 1345, 3154
AflII	CTTAAG	1 cut(s)	1789
AflIII	ACRYGT	7 cut(s)	13, 823, 851, 973, 1537, 1655, 2857
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
Alw21I	GWGCWC	3 cut(s)	991, 1944, 2125
Alw26I	GTCTC	7 cut(s)	174, 542, 929, 953, 1387, 1436, 2631
AlwI	GGATC	4 cut(s)	348, 424, 1514, 3120
Ama87I	CYCGRG	2 cut(s)	410, 2255
AoxI	GGCC	4 cut(s)	32, 232, 1335, 2223
ApeKI	GCWGC	6 cut(s)	194, 704, 862, 2260, 2553, 3164
ApoI	RAATTY	9 cut(s)	119, 453, 640, 673, 1234, 1637, 2686, 2874, 2925
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	3 cut(s)	1806, 2874, 2926
AspS9I	GGNCC	8 cut(s)	174, 576, 682, 1207, 1336, 2224, 2911, 3139
AsuHPI	GGTGA	6 cut(s)	149, 901, 1949, 2473, 2585, 2695
AsuII	TTCGAA	3 cut(s)	117, 2372, 2992
AvaI	CYCGRG	2 cut(s)	410, 2255
AvaII	GGWCC	6 cut(s)	174, 576, 682, 1207, 2911, 3139
AxyI	CCTNAGG	1 cut(s)	2228
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	3 cut(s)	31, 746, 1944
BarI	GAAGNNNNNNTAC	2 cut(s)	2721, 2753
BbsI	GAAGAC	5 cut(s)	147, 636, 1854, 2361, 2552
Bbv12I	GWGCWC	3 cut(s)	991, 1944, 2125
BbvCI	CCTCAGC	1 cut(s)	1698
BbvI	GCAGC	6 cut(s)	181, 691, 874, 2272, 2565, 3151
BccI	CCATC	6 cut(s)	95, 540, 1198, 1763, 2032, 2263
BciT130I	CCWGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
BciVI	GTATCC	1 cut(s)	1297
BclI	TGATCA	2 cut(s)	2578, 2956
BcoDI	GTCTC	7 cut(s)	174, 542, 929, 953, 1387, 1436, 2631
BfaI	CTAG	4 cut(s)	153, 1545, 2081, 2130
BfmI	CTRYAG	2 cut(s)	3037, 3096
BfrI	CTTAAG	1 cut(s)	1789
BfuI	GTATCC	1 cut(s)	1297
BglI	GCCNNNNNGGC	1 cut(s)	1334
BglII	AGATCT	2 cut(s)	375, 2731
BisI	GCNGC	8 cut(s)	35, 195, 705, 863, 1017, 2261, 2554, 3165
BlpI	GCTNAGC	1 cut(s)	3118
BlsI	GCNGC	8 cut(s)	36, 196, 706, 864, 1018, 2262, 2555, 3166
Bme1390I	CCNGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
Bme18I	GGWCC	6 cut(s)	174, 576, 682, 1207, 2911, 3139
BmeT110I	CYCGRG	2 cut(s)	410, 2255
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	8 cut(s)	174, 576, 682, 1207, 1336, 2224, 2911, 3139
BmiI	GGNNCC	2 cut(s)	408, 578
BmrFI	CCNGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	7 cut(s)	424, 640, 1003, 1382, 2444, 2937, 3016
BmuI	ACTGGG	1 cut(s)	782
BpiI	GAAGAC	5 cut(s)	147, 636, 1854, 2361, 2552
BpmI	CTGGAG	3 cut(s)	306, 2579, 2672
Bpu10I	CCTNAGC	2 cut(s)	495, 1698
Bpu1102I	GCTNAGC	1 cut(s)	3118
Bpu14I	TTCGAA	3 cut(s)	117, 2372, 2992
BpuEI	CTTGAG	4 cut(s)	2613, 2927, 2997, 3134
BsaAI	YACGTR	2 cut(s)	854, 974
BsaBI	GATNNNNATC	3 cut(s)	339, 1272, 2577
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	1387
BsaJI	CCNNGG	8 cut(s)	65, 1158, 1329, 1339, 1565, 1977, 1987, 2106
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 3123, 3153
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 872, 1345, 3154
Bse1I	ACTGG	2 cut(s)	777, 1437
Bse21I	CCTNAGG	1 cut(s)	2228
Bse3DI	GCAATG	1 cut(s)	1735
Bse8I	GATNNNNATC	3 cut(s)	339, 1272, 2577
BseBI	CCWGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
BseDI	CCNNGG	8 cut(s)	65, 1158, 1329, 1339, 1565, 1977, 1987, 2106
BseGI	GGATG	6 cut(s)	93, 340, 366, 1273, 1444, 2578
BseJI	GATNNNNATC	3 cut(s)	339, 1272, 2577
BseLI	CCNNNNNNNGG	4 cut(s)	66, 872, 1345, 3154
BseMI	GCAATG	1 cut(s)	1735
BseMII	CTCAG	9 cut(s)	54, 486, 798, 1125, 1469, 1689, 2219, 2696, 2849
BseNI	ACTGG	2 cut(s)	777, 1437
BseRI	GAGGAG	6 cut(s)	94, 97, 1064, 1184, 1985, 2363
BseX3I	CGGCCG	1 cut(s)	32
BseXI	GCAGC	6 cut(s)	181, 691, 874, 2272, 2565, 3151
BseYI	CCCAGC	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	2 cut(s)	35, 127
BshFI	GGCC	4 cut(s)	34, 234, 1337, 2225
BsiEI	CGRYCG	2 cut(s)	35, 127
BsiHKAI	GWGCWC	3 cut(s)	991, 1944, 2125
BsiHKCI	CYCGRG	2 cut(s)	410, 2255
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	5 cut(s)	514, 562, 834, 2514, 3022
BslI	CCNNNNNNNGG	4 cut(s)	66, 872, 1345, 3154
BsmAI	GTCTC	7 cut(s)	174, 542, 929, 953, 1387, 1436, 2631
BsmFI	GGGAC	5 cut(s)	514, 562, 834, 2514, 3022
BsmI	GAATGC	1 cut(s)	2498
BsnI	GGCC	4 cut(s)	34, 234, 1337, 2225
Bso31I	GGTCTC	1 cut(s)	1387
BsoBI	CYCGRG	2 cut(s)	410, 2255
Bsp119I	TTCGAA	3 cut(s)	117, 2372, 2992
Bsp1286I	GDGCHC	5 cut(s)	31, 746, 991, 1944, 2125
Bsp1407I	TGTACA	1 cut(s)	564
Bsp1720I	GCTNAGC	1 cut(s)	3118
BspACI	CCGC	9 cut(s)	25, 35, 204, 358, 448, 592, 1016, 1114, 1300
BspANI	GGCC	4 cut(s)	34, 234, 1337, 2225
BspCNI	CTCAG	9 cut(s)	53, 487, 799, 1126, 1468, 1690, 2220, 2697, 2848
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	408, 578
BspPI	GGATC	4 cut(s)	348, 424, 1514, 3120
BspQI	GCTCTTC	1 cut(s)	1026
BspT104I	TTCGAA	3 cut(s)	117, 2372, 2992
BspTI	CTTAAG	1 cut(s)	1789
BspTNI	GGTCTC	1 cut(s)	1387
BsrBI	CCGCTC	2 cut(s)	37, 448
BsrDI	GCAATG	1 cut(s)	1735
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	777, 1437
BssECI	CCNNGG	8 cut(s)	65, 1158, 1329, 1339, 1565, 1977, 1987, 2106
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	4 cut(s)	65, 1158, 1329, 1339
Bst2UI	CCWGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
Bst6I	CTCTTC	4 cut(s)	1026, 1289, 1518, 2301
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	1789
BstAUI	TGTACA	1 cut(s)	564
BstBAI	YACGTR	2 cut(s)	854, 974
BstBI	TTCGAA	3 cut(s)	117, 2372, 2992
BstC8I	GCNNGC	6 cut(s)	27, 867, 1695, 1871, 1899, 3162
BstDSI	CCRYGG	1 cut(s)	1987
BstENI	CCTNNNNNAGG	2 cut(s)	1343, 3152
BstF5I	GGATG	6 cut(s)	93, 340, 366, 1273, 1444, 2578
BstFNI	CGCG	1 cut(s)	204
BstMAI	GTCTC	7 cut(s)	174, 542, 929, 953, 1387, 1436, 2631
BstMCI	CGRYCG	2 cut(s)	35, 127
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 50, 890, 965, 1334, 1408, 2215
BstNI	CCWGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
BstNSI	RCATGY	5 cut(s)	827, 1411, 1541, 2553, 2861
BstSCI	CCNGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
BstSFI	CTRYAG	2 cut(s)	3037, 3096
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	6 cut(s)	181, 691, 874, 2272, 2565, 3151
BstV2I	GAAGAC	5 cut(s)	147, 636, 1854, 2361, 2552
BstX2I	RGATCY	3 cut(s)	375, 429, 2731
BstYI	RGATCY	3 cut(s)	375, 429, 2731
BstZI	CGGCCG	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	2228
BsuI	GTATCC	1 cut(s)	1297
BsuRI	GGCC	4 cut(s)	34, 234, 1337, 2225
BtgI	CCRYGG	1 cut(s)	1987
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	6 cut(s)	93, 340, 366, 1273, 1444, 2578
BtsIMutI	CAGTG	5 cut(s)	18, 225, 770, 1503, 2315
Cac8I	GCNNGC	6 cut(s)	27, 867, 1695, 1871, 1899, 3162
Cfr13I	GGNCC	8 cut(s)	174, 576, 682, 1207, 1336, 2224, 2911, 3139
CseI	GACGC	3 cut(s)	59, 1019, 2072
Csp6I	GTAC	4 cut(s)	565, 827, 1494, 1509
CviQI	GTAC	4 cut(s)	565, 827, 1494, 1509
EaeI	YGGCCR	2 cut(s)	32, 232
EagI	CGGCCG	1 cut(s)	32
Eam1104I	CTCTTC	4 cut(s)	1026, 1289, 1518, 2301
EarI	CTCTTC	4 cut(s)	1026, 1289, 1518, 2301
Ecl136II	GAGCTC	1 cut(s)	1942
EclXI	CGGCCG	1 cut(s)	32
Eco130I	CCWWGG	4 cut(s)	65, 1158, 1329, 1339
Eco24I	GRGCYC	3 cut(s)	31, 746, 1944
Eco31I	GGTCTC	1 cut(s)	1387
Eco47I	GGWCC	6 cut(s)	174, 576, 682, 1207, 2911, 3139
Eco52I	CGGCCG	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	1942
Eco57I	CTGAAG	4 cut(s)	642, 2214, 2316, 2678
Eco81I	CCTNAGG	1 cut(s)	2228
Eco88I	CYCGRG	2 cut(s)	410, 2255
EcoICRI	GAGCTC	1 cut(s)	1942
EcoNI	CCTNNNNNAGG	2 cut(s)	1343, 3152
EcoO109I	RGGNCCY	4 cut(s)	576, 1336, 2911, 3139
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
EcoT14I	CCWWGG	4 cut(s)	65, 1158, 1329, 1339
EcoT38I	GRGCYC	3 cut(s)	31, 746, 1944
ErhI	CCWWGG	4 cut(s)	65, 1158, 1329, 1339
FalI	AAGNNNNNCTT	8 cut(s)	1614, 1646, 1794, 1826, 2503, 2535, 3101, 3133
FaqI	GGGAC	5 cut(s)	514, 562, 834, 2514, 3022
FauI	CCCGC	3 cut(s)	18, 441, 1293
FauNDI	CATATG	1 cut(s)	1916
FbaI	TGATCA	2 cut(s)	2578, 2956
FblI	GTMKAC	1 cut(s)	2485
Fnu4HI	GCNGC	8 cut(s)	35, 195, 705, 863, 1017, 2261, 2554, 3165
FokI	GGATG	6 cut(s)	80, 347, 373, 1280, 1451, 2585
FriOI	GRGCYC	3 cut(s)	31, 746, 1944
Fsp4HI	GCNGC	8 cut(s)	35, 195, 705, 863, 1017, 2261, 2554, 3165
FspBI	CTAG	4 cut(s)	153, 1545, 2081, 2130
GluI	GCNGC	8 cut(s)	35, 195, 705, 863, 1017, 2261, 2554, 3165
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	3 cut(s)	306, 2579, 2672
HaeIII	GGCC	4 cut(s)	34, 234, 1337, 2225
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	3 cut(s)	59, 1019, 2072
Hin1I	GRCGYC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	2200
HindII	GTYRAC	1 cut(s)	2200
HindIII	AAGCTT	4 cut(s)	1576, 1691, 2097, 2987
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	6 cut(s)	149, 901, 1949, 2473, 2585, 2695
Hpy166II	GTNNAC	7 cut(s)	565, 682, 1991, 2047, 2144, 2200, 2486
Hpy8I	GTNNAC	7 cut(s)	565, 682, 1991, 2047, 2144, 2200, 2486
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyAV	CCTTC	9 cut(s)	716, 794, 1033, 2111, 2368, 2374, 2692, 2810, 3148
HpyCH4IV	ACGT	6 cut(s)	15, 700, 853, 973, 1655, 2887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 50, 890, 965, 1334, 1408, 2215
HpySE526I	ACGT	6 cut(s)	15, 700, 853, 973, 1655, 2887
Hsp92I	GRCGYC	1 cut(s)	51
Ksp22I	TGATCA	2 cut(s)	2578, 2956
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	7 cut(s)	412, 1051, 1147, 1947, 2701, 2802, 3157
Lsp1109I	GCAGC	6 cut(s)	181, 691, 874, 2272, 2565, 3151
LweI	GCATC	7 cut(s)	424, 640, 1003, 1382, 2444, 2937, 3016
MaeI	CTAG	4 cut(s)	153, 1545, 2081, 2130
MaeII	ACGT	6 cut(s)	15, 700, 853, 973, 1655, 2887
MbiI	CCGCTC	2 cut(s)	37, 448
MfeI	CAATTG	1 cut(s)	2388
MflI	RGATCY	3 cut(s)	375, 429, 2731
MhlI	GDGCHC	5 cut(s)	31, 746, 991, 1944, 2125
MlsI	TGGCCA	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	9 cut(s)	291, 536, 726, 820, 1805, 1982, 2018, 2486, 3004
MmeI	TCCRAC	4 cut(s)	754, 1146, 1234, 2220
Mox20I	TGGCCA	1 cut(s)	234
MroXI	GAANNNNTTC	3 cut(s)	1806, 2874, 2926
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	3 cut(s)	560, 996, 2285
Msp20I	TGGCCA	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	1789
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
MunI	CAATTG	1 cut(s)	2388
Mva1269I	GAATGC	1 cut(s)	2498
MvaI	CCWGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	7 cut(s)	31, 50, 890, 965, 1334, 1408, 2215
NdeI	CATATG	1 cut(s)	1916
NlaIV	GGNNCC	2 cut(s)	408, 578
NmeAIII	GCCGAG	2 cut(s)	10, 3085
NmuCI	GTSAC	3 cut(s)	16, 976, 1403
NspI	RCATGY	5 cut(s)	827, 1411, 1541, 2553, 2861
NspV	TTCGAA	3 cut(s)	117, 2372, 2992
PaeR7I	CTCGAG	1 cut(s)	2255
PciI	ACATGT	3 cut(s)	823, 1537, 2857
PciSI	GCTCTTC	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	2884
PctI	GAATGC	1 cut(s)	2498
PdmI	GAANNNNTTC	3 cut(s)	1806, 2874, 2926
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	8 cut(s)	36, 196, 706, 864, 1018, 2262, 2555, 3166
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	9 cut(s)	291, 535, 726, 819, 1804, 1981, 2017, 2485, 3004
PpsI	GAGTC	9 cut(s)	291, 535, 726, 819, 1804, 1981, 2017, 2485, 3004
Ppu21I	YACGTR	2 cut(s)	854, 974
PpuMI	RGGWCCY	3 cut(s)	576, 2911, 3139
PscI	ACATGT	3 cut(s)	823, 1537, 2857
Psp124BI	GAGCTC	1 cut(s)	1944
Psp5II	RGGWCCY	3 cut(s)	576, 2911, 3139
Psp6I	CCWGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
PspN4I	GGNNCC	2 cut(s)	408, 578
PspPI	GGNCC	8 cut(s)	174, 576, 682, 1207, 1336, 2224, 2911, 3139
PspPPI	RGGWCCY	3 cut(s)	576, 2911, 3139
PspXI	VCTCGAGB	1 cut(s)	2255
PsuI	RGATCY	3 cut(s)	375, 429, 2731
PvuI	CGATCG	1 cut(s)	127
RsaI	GTAC	4 cut(s)	566, 828, 1495, 1510
RsaNI	GTAC	4 cut(s)	565, 827, 1494, 1509
RseI	CAYNNNNRTG	3 cut(s)	560, 996, 2285
SacI	GAGCTC	1 cut(s)	1944
SapI	GCTCTTC	1 cut(s)	1026
SatI	GCNGC	8 cut(s)	35, 195, 705, 863, 1017, 2261, 2554, 3165
Sau96I	GGNCC	8 cut(s)	174, 576, 682, 1207, 1336, 2224, 2911, 3139
SchI	GAGTC	9 cut(s)	291, 536, 726, 820, 1805, 1982, 2018, 2486, 3004
ScrFI	CCNGG	6 cut(s)	285, 1317, 1567, 1978, 2107, 2558
SduI	GDGCHC	5 cut(s)	31, 746, 991, 1944, 2125
SfaNI	GCATC	7 cut(s)	424, 640, 1003, 1382, 2444, 2937, 3016
SfcI	CTRYAG	2 cut(s)	3037, 3096
Sfr274I	CTCGAG	1 cut(s)	2255
SfuI	TTCGAA	3 cut(s)	117, 2372, 2992
SinI	GGWCC	6 cut(s)	174, 576, 682, 1207, 2911, 3139
SlaI	CTCGAG	1 cut(s)	2255
SmiMI	CAYNNNNRTG	3 cut(s)	560, 996, 2285
SmlI	CTYRAG	6 cut(s)	1789, 2255, 2628, 2942, 3012, 3149
SmoI	CTYRAG	6 cut(s)	1789, 2255, 2628, 2942, 3012, 3149
SsiI	CCGC	9 cut(s)	25, 35, 204, 358, 448, 592, 1016, 1114, 1300
SspMI	CTAG	4 cut(s)	153, 1545, 2081, 2130
SstI	GAGCTC	1 cut(s)	1944
StyD4I	CCNGG	6 cut(s)	283, 1315, 1565, 1976, 2105, 2556
StyI	CCWWGG	4 cut(s)	65, 1158, 1329, 1339
TaiI	ACGT	6 cut(s)	18, 703, 856, 976, 1658, 2890
TatI	WGTACW	3 cut(s)	564, 1493, 1508
TauI	GCSGC	2 cut(s)	37, 1019
TscAI	CASTG	5 cut(s)	25, 225, 777, 1503, 2322
TseFI	GTSAC	3 cut(s)	16, 976, 1403
TseI	GCWGC	6 cut(s)	194, 704, 862, 2260, 2553, 3164
Tsp45I	GTSAC	3 cut(s)	16, 976, 1403
TspDTI	ATGAA	9 cut(s)	82, 450, 572, 642, 914, 1491, 1608, 1635, 2484
TspRI	CASTG	5 cut(s)	25, 225, 777, 1503, 2322
Van91I	CCANNNNNTGG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	1789
VpaK11BI	GGWCC	6 cut(s)	174, 576, 682, 1207, 2911, 3139
XagI	CCTNNNNNAGG	2 cut(s)	1343, 3152
XapI	RAATTY	9 cut(s)	119, 453, 640, 673, 1234, 1637, 2686, 2874, 2925
XbaI	TCTAGA	1 cut(s)	2080
XceI	RCATGY	5 cut(s)	827, 1411, 1541, 2553, 2861
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 2287
XhoI	CTCGAG	1 cut(s)	2255
XmiI	GTMKAC	1 cut(s)	2485
XmnI	GAANNNNTTC	3 cut(s)	1806, 2874, 2926
XspI	CTAG	4 cut(s)	153, 1545, 2081, 2130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.