Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

8489734 .. 8492550

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGTGAGGCCATATGCAGTGAAGGGAAAGAAGCGGAAGAAGAATGCAGATGTATACGACAGGGCAGAGGAAGAAGAAGTAGCAGAAGCAGCAGCAGCAGCAGCTGAACCAGAAGAACCAGAGGCAGAGGAAGCCGATAAGAAACGGATAAAAGGAAATGAATCAGAAGAAAAGGAGGGCAACCCAATTGAGCTCGAGGGTATTCCATTGGCCCCAGCAGAGATTAACCCCAAGAACGGACCTGGTGCTATCTTCATCCTTGAGAAAGCTTCTCTGGAAGTTGCCAAAGTTGGAAAGACTTATCAGCTATTGAATTCTGACGACCACTCAAATTTCCTGAGGAAGAAGAACAAGGATCCTGCTCTTTACAGGCCTGATATCGTTCATCAGGCTCTCCTTATGGTTTTAGATAGCCCAATTAATAAAGCTGGGAGGTTGCGAAACGTGTATGTGAGAACTGCAGCAGGTGTTCTTATTGAAGTTAAGCCATATGTTCGTATCCCGAGGACATTTAAGCGGTTCTCTGGTGTGATGTTGCAGCTGCTACAAAAACTGAGTATATCTGCTGTTGGTAAGCGTGAGAAACTTATGCGTGTGATAAAGAACCCTGTGACACAGTATTTACCCGTCAACTCTCGTAAAATAGGCTTCTCATACAGTTCGGAAAAATTGGTTAACATACAGAATTATGTTGCTAGTGCTGAAAACAGTACGGACTTTGTTTTTGTGGTTGGTGCGATGGCTCACGGGAAAGTTGAGACAGACTATAATGAGGATTTCATTTCAGTATGTGGTTATCCACTGAGCGCGGCGTATTGTATCACAATGATTTGCCAGGCGTTGGCTGGAAAGTGGACCGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

289

Amino Acids

31.97

Weight (kDa)

8.88

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	841
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	809
AciI	CCGC	3 cut(s)	34, 517, 809
AclWI	GGATC	2 cut(s)	350, 363
AcsI	RAATTY	2 cut(s)	313, 331
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	2 cut(s)	236, 841
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	313, 479
AjnI	CCWGG	2 cut(s)	241, 834
AluBI	AGCT	6 cut(s)	104, 193, 269, 307, 428, 541
AluI	AGCT	6 cut(s)	104, 193, 269, 307, 428, 541
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	2 cut(s)	350, 363
AlwNI	CAGNNNCTG	1 cut(s)	104
Ama87I	CYCGRG	2 cut(s)	194, 502
AoxI	GGCC	3 cut(s)	8, 210, 371
ApeKI	GCWGC	8 cut(s)	89, 92, 95, 98, 101, 461, 538, 541
ApoI	RAATTY	2 cut(s)	313, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	3 cut(s)	211, 239, 855
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	194, 502
AvaII	GGWCC	2 cut(s)	239, 855
AxyI	CCTNAGG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	8 cut(s)	101, 104, 107, 110, 113, 473, 528, 550
BccI	CCATC	1 cut(s)	733
BciT130I	CCWGG	2 cut(s)	243, 836
BciVI	GTATCC	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	9 cut(s)	90, 93, 96, 99, 102, 462, 539, 542, 810
BlsI	GCNGC	9 cut(s)	91, 94, 97, 100, 103, 463, 540, 543, 811
Bme1390I	CCNGG	2 cut(s)	243, 836
Bme18I	GGWCC	2 cut(s)	239, 855
BmeT110I	CYCGRG	2 cut(s)	194, 502
BmgT120I	GGNCC	3 cut(s)	211, 239, 855
BmiI	GGNNCC	2 cut(s)	213, 357
BmrFI	CCNGG	2 cut(s)	243, 836
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 841
Bse21I	CCTNAGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	243, 836
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	236, 841
BseMII	CTCAG	3 cut(s)	329, 545, 794
BseXI	GCAGC	8 cut(s)	101, 104, 107, 110, 113, 473, 528, 550
BseYI	CCCAGC	2 cut(s)	214, 428
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	3 cut(s)	10, 212, 373
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	194, 502
BslI	CCNNNNNNNGG	2 cut(s)	236, 841
BsmAI	GTCTC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	10, 212, 373
BsoBI	CYCGRG	2 cut(s)	194, 502
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	34, 517, 809
BspANI	GGCC	3 cut(s)	10, 212, 373
BspCNI	CTCAG	3 cut(s)	330, 546, 795
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	213, 357
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	350, 363
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	1 cut(s)	355
BssNAI	GTATAC	1 cut(s)	55
Bst1107I	GTATAC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	243, 836
Bst4CI	ACNGT	4 cut(s)	618, 659, 710, 859
BstDEI	CTNAG	3 cut(s)	338, 554, 803
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	809
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 95, 98, 101, 131
BstNI	CCWGG	2 cut(s)	243, 836
BstSCI	CCNGG	2 cut(s)	241, 834
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	8 cut(s)	101, 104, 107, 110, 113, 473, 528, 550
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BstZ17I	GTATAC	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	10, 212, 373
BtgZI	GCGATG	1 cut(s)	752
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 800
BveI	ACCTGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	809
Cfr13I	GGNCC	3 cut(s)	211, 239, 855
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	711
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	3 cut(s)	338, 554, 803
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	239, 855
Eco53kI	GAGCTC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	194, 502
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	241, 834
EcoRV	GATATC	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	195
FauNDI	CATATG	2 cut(s)	13, 490
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	9 cut(s)	90, 93, 96, 99, 102, 462, 539, 542, 810
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	9 cut(s)	90, 93, 96, 99, 102, 462, 539, 542, 810
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	9 cut(s)	90, 93, 96, 99, 102, 462, 539, 542, 810
GsaI	CCCAGC	2 cut(s)	218, 432
HaeIII	GGCC	3 cut(s)	10, 212, 373
HhaI	GCGC	1 cut(s)	809
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HincII	GTYRAC	2 cut(s)	631, 676
HindII	GTYRAC	2 cut(s)	631, 676
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	1 cut(s)	161
HpaI	GTTAAC	1 cut(s)	676
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	55, 631, 676, 855
Hpy188I	TCNGA	3 cut(s)	166, 319, 664
Hpy188III	TCNNGA	3 cut(s)	275, 337, 502
Hpy8I	GTNNAC	4 cut(s)	55, 631, 676, 855
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	4 cut(s)	618, 659, 710, 859
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	4 cut(s)	17, 47, 461, 538
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 95, 98, 101, 131
HpyF3I	CTNAG	3 cut(s)	338, 554, 803
HpySE526I	ACGT	1 cut(s)	444
HspAI	GCGC	1 cut(s)	807
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	8 cut(s)	101, 104, 107, 110, 113, 473, 528, 550
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	9 cut(s)	49, 52, 83, 86, 125, 179, 244, 355, 358
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	6 cut(s)	186, 313, 331, 417, 668, 685
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	9 cut(s)	61, 115, 121, 169, 190, 333, 426, 498, 766
MseI	TTAA	5 cut(s)	225, 420, 483, 513, 675
MspA1I	CMGCKG	2 cut(s)	104, 541
MspR9I	CCNGG	2 cut(s)	243, 836
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	243, 836
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	5 cut(s)	89, 95, 98, 101, 131
NdeI	CATATG	2 cut(s)	13, 490
NdeII	GATC	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	213, 357
NmuCI	GTSAC	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	373
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	841
PkrI	GCNGC	9 cut(s)	91, 94, 97, 100, 103, 463, 540, 543, 811
PshBI	ATTAAT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	241, 834
PspFI	CCCAGC	2 cut(s)	214, 428
PspGI	CCWGG	2 cut(s)	241, 834
PspN4I	GGNNCC	2 cut(s)	213, 357
PspPI	GGNCC	3 cut(s)	211, 239, 855
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	104, 541
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	5 cut(s)	225, 420, 483, 513, 675
SatI	GCNGC	9 cut(s)	90, 93, 96, 99, 102, 462, 539, 542, 810
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	3 cut(s)	211, 239, 855
ScrFI	CCNGG	2 cut(s)	243, 836
SduI	GDGCHC	1 cut(s)	195
SexAI	ACCWGGT	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	239, 855
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	194, 260
SmoI	CTYRAG	2 cut(s)	194, 260
Sse9I	AATT	6 cut(s)	186, 313, 331, 417, 668, 685
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	3 cut(s)	34, 517, 809
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	241, 834
TaaI	ACNGT	4 cut(s)	618, 659, 710, 859
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	186, 313, 331, 417, 668, 685
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	5 cut(s)	225, 420, 483, 513, 675
Tru9I	TTAA	5 cut(s)	225, 420, 483, 513, 675
TscAI	CASTG	2 cut(s)	24, 807
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	8 cut(s)	89, 92, 95, 98, 101, 461, 538, 541
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	174, 244, 374, 769
TspGWI	ACGGA	3 cut(s)	160, 252, 728
TspRI	CASTG	2 cut(s)	24, 807
Van91I	CCANNNNNTGG	1 cut(s)	841
VpaK11BI	GGWCC	2 cut(s)	239, 855
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	2 cut(s)	313, 331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.