Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

40287286 .. 40289012

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGCAGATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGTGGCATTTTGTGATCTGCAGGCTGTTTACATGGTTTTAGATAGCCCGATTAATAAAGCTGGGAAGTTGCGAGGTGTGTATATGAAGACCAAGGATGGTAAACTTATTGAGATTAAACCATATGTTCGTATCCCAAGGGCGTTTAAGCTATTCTTTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGTCGTTGGTAAGCGTGAGAAACTTATGCGTATGATCAAGAACCCTATGACACAGTATTTACCTGTTAACTCCCGGAAAGTAGGACTCTCGTACAGTTCAGAGAAACTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATATGGACCTTGTTTTTGTGTGGGATAGAAGAACAAATCTTGTTTACACAGAAAAGGATATTGATGAAGTTCGGGCTGAATGGGCGAAACATGTTATGAAGTTTGCACAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

197

Amino Acids

21.97

Weight (kDa)

9.92

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	53 - 153	1.2e-31	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	15
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	452
AhlI	ACTAGT	1 cut(s)	439
AluBI	AGCT	6 cut(s)	25, 29, 53, 197, 286, 310
AluI	AGCT	6 cut(s)	25, 29, 53, 197, 286, 310
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	5 cut(s)	53, 307, 310, 464, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	406
AsuNHI	GCTAGC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BccI	CCATC	3 cut(s)	4, 118, 227
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	406
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	26, 440
BfmI	CTRYAG	3 cut(s)	54, 155, 314
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
BlsI	GCNGC	5 cut(s)	55, 309, 312, 466, 469
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	406
BmtI	GCTAGC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	45, 228, 272
BseDI	CCNNGG	3 cut(s)	45, 228, 272
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	314
BseXI	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BseYI	CCCAGC	2 cut(s)	86, 197
BsiSI	CCGG	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	151, 366
BspCNI	CTCAG	1 cut(s)	315
BspMAI	CTGCAG	2 cut(s)	58, 159
BspOI	GCTAGC	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	45, 228, 272
BssMI	GATC	2 cut(s)	151, 366
BssT1I	CCWWGG	3 cut(s)	45, 228, 272
Bst4CI	ACNGT	2 cut(s)	387, 428
BstC8I	GCNNGC	3 cut(s)	23, 27, 159
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	154, 369
BstMBI	GATC	2 cut(s)	151, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	3 cut(s)	54, 155, 314
BstV1I	GCAGC	5 cut(s)	40, 297, 319, 451, 454
BstV2I	GAAGAC	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	23, 27, 159
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	169, 301, 569
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	153, 368
DpnII	GATC	2 cut(s)	151, 366
DraIII	CACNNNGTG	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	45, 228, 272
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	15
EcoT14I	CCWWGG	3 cut(s)	45, 228, 272
ErhI	CCWWGG	3 cut(s)	45, 228, 272
FaeI	CATG	3 cut(s)	172, 304, 572
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	3 cut(s)	168, 300, 568
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
FspBI	CTAG	2 cut(s)	26, 440
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
GsaI	CCCAGC	2 cut(s)	90, 201
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	172, 304, 572
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	417
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	4 cut(s)	166, 239, 400, 523
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	2 cut(s)	117, 370
Hpy8I	GTNNAC	4 cut(s)	166, 239, 400, 523
HpyCH4III	ACNGT	2 cut(s)	387, 428
HpyCH4V	TGCA	4 cut(s)	56, 157, 307, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	172, 304, 572
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	151, 366
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	9 cut(s)	42, 51, 72, 96, 102, 143, 183, 408, 419
Lsp1109I	GCAGC	5 cut(s)	40, 297, 319, 451, 454
MaeI	CTAG	2 cut(s)	26, 440
MalI	GATC	2 cut(s)	153, 368
MboI	GATC	2 cut(s)	151, 366
MboII	GAAGA	2 cut(s)	235, 519
MlyI	GAGTC	1 cut(s)	411
MnlI	CCTC	1 cut(s)	203
MseI	TTAA	4 cut(s)	189, 252, 282, 399
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	151, 366
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	172, 304, 572
NspI	RCATGY	1 cut(s)	572
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	447
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	5 cut(s)	55, 309, 312, 466, 469
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PscI	ACATGT	1 cut(s)	568
PshBI	ATTAAT	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	86, 197
PspPI	GGNCC	1 cut(s)	484
PstI	CTGCAG	2 cut(s)	58, 159
PstNI	CAGNNNCTG	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	4 cut(s)	189, 252, 282, 399
SatI	GCNGC	5 cut(s)	54, 308, 311, 465, 468
Sau3AI	GATC	2 cut(s)	151, 366
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	406
SfcI	CTRYAG	3 cut(s)	54, 155, 314
SinI	GGWCC	1 cut(s)	484
SpeI	ACTAGT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	26, 440
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	3 cut(s)	45, 228, 272
TaaI	ACNGT	2 cut(s)	387, 428
Tru1I	TTAA	4 cut(s)	189, 252, 282, 399
Tru9I	TTAA	4 cut(s)	189, 252, 282, 399
TseI	GCWGC	5 cut(s)	53, 307, 310, 464, 467
TspDTI	ATGAA	3 cut(s)	236, 558, 590
VpaK11BI	GGWCC	1 cut(s)	484
VspI	ATTAAT	1 cut(s)	189
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	2 cut(s)	26, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.