Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2562770 .. 2563463

Gene Structure 694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGACCGAGGATGGTAAACTTATTGAGATTAAACCATATGTTTGTATCCCAAGGACGTTTAAGCGGTTCTCTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGCCGTTGGTAAGCATGAGAAACTTATGCGTATGATCAAAAACCCAGTGACACAGTATTTACCTGTTAACTCCTGGAAAGTAGGACTCTCGTACAGTTCAGAGAAATTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATATGGACCTTGTCTTTGTGGTATGGTTTGTACTAACTTGGCGTTATCTTTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

105

Amino Acids

12.26

Weight (kDa)

9.75

Isoelectric Point (pI)

21.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	1 - 87	5e-24	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	206, 291
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	88, 91, 245, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	78, 100, 232, 235
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	89, 92, 246, 249
BlsI	GCNGC	4 cut(s)	90, 93, 247, 250
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	9, 53
Bse1I	ACTGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	9, 53
BseGI	GGATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	78, 100, 232, 235
BsmI	GAATGC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	9, 53
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	168, 209
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	78, 100, 232, 235
BstV2I	GAAGAC	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	205, 290
CviAII	CATG	2 cut(s)	82, 128
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
CviQI	GTAC	2 cut(s)	205, 290
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	85, 131
FatI	CATG	2 cut(s)	81, 127
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	89, 92, 246, 249
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	89, 92, 246, 249
GluI	GCNGC	4 cut(s)	89, 92, 246, 249
Hin1II	CATG	2 cut(s)	85, 131
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	198
HpaI	GTTAAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	20, 181
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	20, 181
HpyCH4III	ACNGT	2 cut(s)	168, 209
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	85, 131
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	60, 171, 172, 189, 199
Lsp1109I	GCAGC	4 cut(s)	78, 100, 232, 235
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	3 cut(s)	33, 63, 180
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	85, 131
NmuCI	GTSAC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	90, 93, 247, 250
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	206, 291
RsaNI	GTAC	2 cut(s)	205, 290
SaqAI	TTAA	3 cut(s)	33, 63, 180
SatI	GCNGC	4 cut(s)	89, 92, 246, 249
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	4 cut(s)	62, 93, 178, 270
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	168, 209
TaiI	ACGT	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	33, 63, 180
Tru9I	TTAA	3 cut(s)	33, 63, 180
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	88, 91, 245, 248
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.