Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

2539150 .. 2546089

Gene Structure 6940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1030500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGCTACTCATTAATAAACCCTCGACTAGTCAAAAACCCTAGGTACTGGAGGAACACTATGGTGAGGCGGAAGAGGGAGCAGTCGGAGTCGCAGTCCCAGAATTTATCCACTAGGATGGTGAAGCGGAAGTTGGAAGACGAATCGACAACAACCGAAGAGAAAACAGAAGATGATGTCACGCATAATGCCATTATACCGTCCCCGCCGAATGTTGAGGTCCGGGCAACTTTTATTGTAGACAATGCCTCTCTGAGAAAGGGTGTCGTTCGAAAGAGGTGGGATAAGATTCTAGATTCAGAGGAAGACGCGGATTTCCTCAAACAAAAGAAAGATGTGAATGATTATAGGCCTGGGAGTTGTCTACCCGGTTTGCTCTTGAGCTATAACTTAGACGCTCTTCGTTCAATTTTTGATAGCAAACTTAATAAAGCTGGTATGGTAGGAGCTGTGTATGTAAAAACAGATAATGGAGTGTTATTTGAGATTAAACCCCATGTCCGTATACCAACTACCAAAGAACGTGTAGGCGCTTTTGTGGAGTCATGCTTACTAGATAAAAAATGCATACGGACCAAAGATACAAATGAAATTCTTATGCGCGTCATTGCGGAACCTGTAACCCGACATTTACCAGTCAACTCTCGTGTAGTAGGTCTCTCTTATAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

225

Amino Acids

25.59

Weight (kDa)

9.47

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	79 - 223	5.2e-20	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	240, 364, 505
AccII	CGCG	2 cut(s)	311, 603
AciI	CCGC	5 cut(s)	70, 127, 206, 311, 611
AcsI	RAATTY	2 cut(s)	103, 591
AfaI	GTAC	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	1 cut(s)	408
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	384, 434, 449
AluI	AGCT	3 cut(s)	384, 434, 449
Alw26I	GTCTC	1 cut(s)	662
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	103, 591
AseI	ATTAAT	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	533, 603
AspS9I	GGNCC	2 cut(s)	220, 573
AsuC2I	CCSGG	2 cut(s)	224, 369
AsuHPI	GGTGA	2 cut(s)	76, 133
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	220, 573
AvrII	CCTAGG	1 cut(s)	41
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	2 cut(s)	144, 312
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	224, 369
BcoDI	GTCTC	1 cut(s)	662
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	5 cut(s)	29, 42, 114, 293, 554
BfoI	RGCGCY	1 cut(s)	534
BlnI	CCTAGG	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	224, 354, 369
Bme18I	GGWCC	2 cut(s)	220, 573
BmgT120I	GGNCC	2 cut(s)	220, 573
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	3 cut(s)	224, 354, 369
BpiI	GAAGAC	2 cut(s)	144, 312
BpmI	CTGGAG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	224, 369
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	41, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	2 cut(s)	53, 635
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	41, 353
BseGI	GGATG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	53, 635
Bsh1236I	CGCG	2 cut(s)	311, 603
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	223, 369
BslFI	GGGAC	2 cut(s)	82, 187
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	2 cut(s)	82, 187
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	662
Bsp119I	TTCGAA	1 cut(s)	271
BspACI	CCGC	5 cut(s)	70, 127, 206, 311, 611
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	2 cut(s)	311, 603
BspLI	GGNNCC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	53, 635
BssECI	CCNNGG	2 cut(s)	41, 353
BssNAI	GTATAC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	3 cut(s)	68, 153, 405
BstBI	TTCGAA	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	254, 391
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	2 cut(s)	311, 603
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	533, 603
BstMAI	GTCTC	1 cut(s)	662
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	3 cut(s)	222, 352, 367
BstUI	CGCG	2 cut(s)	311, 603
BstV2I	GAAGAC	2 cut(s)	144, 312
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	123
CfoI	GCGC	2 cut(s)	533, 603
Cfr13I	GGNCC	2 cut(s)	220, 573
CseI	GACGC	3 cut(s)	317, 404, 592
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	497, 546
CviJI	RGCY	5 cut(s)	6, 352, 384, 434, 449
CviKI_1	RGCY	5 cut(s)	6, 352, 384, 434, 449
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	254, 391
Eam1104I	CTCTTC	3 cut(s)	68, 153, 405
EarI	CTCTTC	3 cut(s)	68, 153, 405
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	2 cut(s)	220, 573
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	500, 549
FaqI	GGGAC	2 cut(s)	82, 187
FatI	CATG	2 cut(s)	496, 545
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	3 cut(s)	240, 364, 505
FokI	GGATG	1 cut(s)	130
FspBI	CTAG	5 cut(s)	29, 42, 114, 293, 554
GlaI	GCGC	2 cut(s)	532, 602
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	2 cut(s)	223, 369
HgaI	GACGC	3 cut(s)	317, 404, 592
HhaI	GCGC	2 cut(s)	533, 603
Hin1II	CATG	2 cut(s)	500, 549
Hin6I	GCGC	2 cut(s)	531, 601
HinP1I	GCGC	2 cut(s)	531, 601
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	5 cut(s)	89, 143, 289, 296, 542
HpaII	CCGG	2 cut(s)	223, 369
HphI	GGTGA	2 cut(s)	76, 133
Hpy166II	GTNNAC	4 cut(s)	241, 365, 506, 640
Hpy188I	TCNGA	3 cut(s)	88, 255, 301
Hpy188III	TCNNGA	2 cut(s)	293, 379
Hpy8I	GTNNAC	4 cut(s)	241, 365, 506, 640
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	1 cut(s)	567
HpyF3I	CTNAG	2 cut(s)	254, 391
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	2 cut(s)	500, 549
HspAI	GCGC	2 cut(s)	531, 601
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	79, 446
LpnPI	CCDG	9 cut(s)	34, 113, 236, 339, 366, 382, 420, 630, 648
MaeI	CTAG	5 cut(s)	29, 42, 114, 293, 554
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	2 cut(s)	178, 619
MboII	GAAGA	6 cut(s)	85, 149, 170, 182, 317, 392
MluCI	AATT	3 cut(s)	103, 408, 591
MlyI	GAGTC	2 cut(s)	98, 551
MmeI	TCCRAC	2 cut(s)	66, 114
MnlI	CCTC	9 cut(s)	33, 45, 60, 69, 211, 259, 270, 295, 329
Mph1103I	ATGCAT	1 cut(s)	569
MseI	TTAA	3 cut(s)	14, 426, 489
MslI	CAYNNNNRTG	2 cut(s)	62, 116
MspI	CCGG	2 cut(s)	223, 369
MspR9I	CCNGG	3 cut(s)	224, 354, 369
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	2 cut(s)	311, 603
NciI	CCSGG	2 cut(s)	224, 369
NlaIII	CATG	2 cut(s)	500, 549
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	143, 289, 296
PleI	GAGTC	2 cut(s)	97, 550
PpsI	GAGTC	2 cut(s)	97, 550
PshBI	ATTAAT	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	220, 573
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	62, 116
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	14, 426, 489
Sau96I	GGNCC	2 cut(s)	220, 573
SchI	GAGTC	2 cut(s)	98, 551
ScrFI	CCNGG	3 cut(s)	224, 354, 369
SetI	ASST	9 cut(s)	47, 222, 281, 386, 436, 451, 526, 619, 658
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	2 cut(s)	220, 573
SmiMI	CAYNNNNRTG	2 cut(s)	62, 116
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	3 cut(s)	103, 408, 591
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	5 cut(s)	70, 127, 206, 311, 611
SspMI	CTAG	5 cut(s)	29, 42, 114, 293, 554
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	222, 352, 367
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	3 cut(s)	25, 146, 271
TasI	AATT	3 cut(s)	103, 408, 591
TfiI	GAWTC	3 cut(s)	143, 289, 296
Tru1I	TTAA	3 cut(s)	14, 426, 489
Tru9I	TTAA	3 cut(s)	14, 426, 489
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	603, 660
TspGWI	ACGGA	2 cut(s)	491, 586
VpaK11BI	GGWCC	2 cut(s)	220, 573
VspI	ATTAAT	1 cut(s)	14
XapI	RAATTY	2 cut(s)	103, 591
XbaI	TCTAGA	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	41
XmiI	GTMKAC	3 cut(s)	240, 364, 505
XspI	CTAG	5 cut(s)	29, 42, 114, 293, 554
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.