Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Reverse (-)

11956875 .. 11960114

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCGTATGATCACGAACCCTATGACACAGTATTTACCTGTTAACTCCCGGAAAAGTGGACTCTCGTACAGTTCAGAGAAACTAGTTAGCATTCAAAAATATGTTGTTGCTGCTGAAAACAATATGGACCTTGTTTTTGTGGAGTATGGTGCATACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGTATGGGTAGTTTTGTGCTTTTATTTATTTATTTTGGTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

8.96

Isoelectric Point (pI)

14.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	9
BssMI	GATC	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	30, 71
BstC8I	GCNNGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	1 cut(s)	168
CviKI_1	RGCY	1 cut(s)	168
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	127
FaiI	YATR	8 cut(s)	8, 23, 102, 125, 147, 154, 194, 235
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	1 cut(s)	60
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	43, 59
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	2 cut(s)	43, 59
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	30, 71
HpyCH4V	TGCA	2 cut(s)	152, 185
Ksp22I	TGATCA	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	2 cut(s)	51, 62
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	42
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	3 cut(s)	40, 132, 170
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	30, 71
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	127
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.