Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

21092183 .. 21094297

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTGAGGCCGTATGGGATTAAAGTGAACAAGAGAAAGGAGAGAGAAGAGAGGTATGATAAGGAAGAAGATGAAGTAGAGGAGCAACCAAAGTTTGAGCAAAAACAAAAGGCAAGAGAAAGTTCGAAGAAAGCTAAAAAAGAAAGCACTTCAAGAGCAGAGGAAGATAATGACGAGGAGGAAGTAACTGTGGAAGCAACTGCAGCAGCAGAGGATATTGTGGGAGGGATACCTATTGTCCTTAATGCTCCTAACAAGGAAAAGTCTGGCATTGTATTCGTGCTTGAGAAGGCCTCTCTTGAAGTTGCCAAAGTTGGAAAGACTTACCAGCTACTGAACTCGGATGATCATGCTAATTTCTTGAAAAAGAATAACAGAAATCCGGCTGATTACCGACCAGACATTACTCATCAGGCGCTTCTTATGATTTTGGATAGTCCGGTTAATAAAGCTGGGAGGTTGAAAGCTGTTTATGTTAGAACAGAAAAAGGTGTCCTTTTTGAAGTTAAGCCACATGTTCGTATACCAAGAACTTTCAAACGATTTGCCGGAATCATGTTGCAACTGCTACAAAAGCTGAGCATTACTGCAGTTAACAGCCGTGAGAAGCTTCTACGGTGTGTCAAGAACCCTATCGAAGAACATCATCTACCGGTTAACTCCCACAGAATAGGCTTCTCGCATAGCTCTGAGAAACTCGTCAATATGCAGAAACACCTAGCTACTGTATGTGATGATGATAGAGACACAGTTTTTGTGGTAGGCGCAATGGCACACGGGAAAATAGACTGCAACTATATCGATGAATTTGTGTCGGTTTCAGAGTATCCATTGAGCGCAGCCTACTGTATCTCAAGAATCTGCGAGGCATTAGCAACAAATTGGAATATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

298

Amino Acids

33.83

Weight (kDa)

7.66

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	93 - 291	2.3e-68	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	514
AgeI	ACCGGT	1 cut(s)	652
AgsI	TTSAA	6 cut(s)	153, 302, 364, 463, 503, 538
AluBI	AGCT	8 cut(s)	134, 331, 452, 467, 577, 610, 687, 722
AluI	AGCT	8 cut(s)	134, 331, 452, 467, 577, 610, 687, 722
Alw26I	GTCTC	1 cut(s)	738
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	8, 291
ApeKI	GCWGC	3 cut(s)	203, 206, 839
ApoI	RAATTY	1 cut(s)	806
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AsiGI	ACCGGT	1 cut(s)	652
AspLEI	GCGC	3 cut(s)	418, 767, 839
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	215, 218, 851
BceAI	ACGGC	1 cut(s)	585
BcgI	CGANNNNNNTGC	4 cut(s)	259, 293, 781, 815
BciVI	GTATCC	2 cut(s)	222, 837
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	2 cut(s)	201, 588
BfoI	RGCGCY	1 cut(s)	419
BfuI	GTATCC	2 cut(s)	222, 837
BisI	GCNGC	3 cut(s)	204, 207, 840
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	3 cut(s)	205, 208, 841
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu1102I	GCTNAGC	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	305, 838
Bsa29I	ATCGAT	1 cut(s)	801
BsaWI	WCCGGW	2 cut(s)	439, 652
Bse118I	RCCGGY	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	774
BseCI	ATCGAT	1 cut(s)	801
BseGI	GGATG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	569, 681
BseRI	GAGGAG	2 cut(s)	95, 191
BseXI	GCAGC	3 cut(s)	215, 218, 851
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	2 cut(s)	10, 293
BshTI	ACCGGT	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	801
BsiSI	CCGG	4 cut(s)	383, 440, 549, 653
BsmAI	GTCTC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	10, 293
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	346
Bsp1720I	GCTNAGC	1 cut(s)	578
BspANI	GGCC	2 cut(s)	10, 293
BspCNI	CTCAG	2 cut(s)	570, 682
BspDI	ATCGAT	1 cut(s)	801
BspMAI	CTGCAG	2 cut(s)	205, 592
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	652
BssMI	GATC	1 cut(s)	346
BssNAI	GTATAC	1 cut(s)	524
Bst1107I	GTATAC	1 cut(s)	524
Bst4CI	ACNGT	5 cut(s)	190, 618, 727, 751, 848
Bst6I	CTCTTC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	578, 690
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	3 cut(s)	418, 767, 839
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 574
BstNSI	RCATGY	1 cut(s)	518
BstSFI	CTRYAG	2 cut(s)	201, 588
BstV1I	GCAGC	3 cut(s)	215, 218, 851
BstZ17I	GTATAC	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	801
BsuI	GTATCC	2 cut(s)	222, 837
BsuRI	GGCC	2 cut(s)	10, 293
BsuTUI	ATCGAT	1 cut(s)	801
BtsCI	GGATG	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	3 cut(s)	418, 767, 839
Cfr10I	RCCGGY	1 cut(s)	652
ClaI	ATCGAT	1 cut(s)	801
CspAI	ACCGGT	1 cut(s)	652
CviAII	CATG	3 cut(s)	350, 515, 556
DdeI	CTNAG	2 cut(s)	578, 690
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	293
FaeI	CATG	3 cut(s)	353, 518, 559
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	3 cut(s)	349, 514, 555
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	204, 207, 840
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	204, 207, 840
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	3 cut(s)	417, 766, 838
GluI	GCNGC	3 cut(s)	204, 207, 840
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	10, 293
HapII	CCGG	4 cut(s)	383, 440, 549, 653
HhaI	GCGC	3 cut(s)	418, 767, 839
Hin1II	CATG	3 cut(s)	353, 518, 559
Hin6I	GCGC	3 cut(s)	416, 765, 837
HinP1I	GCGC	3 cut(s)	416, 765, 837
HincII	GTYRAC	2 cut(s)	595, 658
HindII	GTYRAC	2 cut(s)	595, 658
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	552, 858
HpaI	GTTAAC	2 cut(s)	595, 658
HpaII	CCGG	4 cut(s)	383, 440, 549, 653
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	28, 524, 595, 658
Hpy188I	TCNGA	3 cut(s)	343, 691, 823
Hpy188III	TCNNGA	5 cut(s)	153, 299, 361, 625, 855
Hpy8I	GTNNAC	4 cut(s)	28, 524, 595, 658
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	5 cut(s)	190, 618, 727, 751, 848
HpyCH4V	TGCA	5 cut(s)	203, 562, 590, 709, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 574
HpyF3I	CTNAG	2 cut(s)	578, 690
Hsp92II	CATG	3 cut(s)	353, 518, 559
HspAI	GCGC	3 cut(s)	416, 765, 837
Ksp22I	TGATCA	1 cut(s)	346
KspAI	GTTAAC	2 cut(s)	595, 658
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	82, 253
LpnPI	CCDG	9 cut(s)	252, 341, 396, 398, 411, 438, 453, 562, 666
Lsp1109I	GCAGC	3 cut(s)	215, 218, 851
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	6 cut(s)	59, 77, 80, 139, 176, 650
MluCI	AATT	3 cut(s)	355, 806, 880
MmeI	TCCRAC	1 cut(s)	295
MseI	TTAA	6 cut(s)	21, 243, 444, 507, 594, 657
MspI	CCGG	4 cut(s)	383, 440, 549, 653
MwoI	GCNNNNNNNGC	2 cut(s)	203, 574
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	353, 518, 559
NspI	RCATGY	1 cut(s)	518
NspV	TTCGAA	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	293
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	552, 858
PinAI	ACCGGT	1 cut(s)	652
PkrI	GCNGC	3 cut(s)	205, 208, 841
PscI	ACATGT	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	452
PsrI	GAACNNNNNNTAC	2 cut(s)	633, 665
PstI	CTGCAG	2 cut(s)	205, 592
PstNI	CAGNNNCTG	1 cut(s)	334
SaqAI	TTAA	6 cut(s)	21, 243, 444, 507, 594, 657
SatI	GCNGC	3 cut(s)	204, 207, 840
Sau3AI	GATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	201, 588
SfuI	TTCGAA	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	284, 853
SmoI	CTYRAG	2 cut(s)	284, 853
Sse9I	AATT	3 cut(s)	355, 806, 880
SseBI	AGGCCT	1 cut(s)	293
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	1 cut(s)	719
StuI	AGGCCT	1 cut(s)	293
TaaI	ACNGT	5 cut(s)	190, 618, 727, 751, 848
TaqI	TCGA	3 cut(s)	125, 636, 801
TasI	AATT	3 cut(s)	355, 806, 880
TfiI	GAWTC	2 cut(s)	552, 858
Tru1I	TTAA	6 cut(s)	21, 243, 444, 507, 594, 657
Tru9I	TTAA	6 cut(s)	21, 243, 444, 507, 594, 657
TseI	GCWGC	3 cut(s)	203, 206, 839
TspDTI	ATGAA	2 cut(s)	87, 819
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.