Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

12758238 .. 12762621

Gene Structure 4384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTGAGGCCATACGCAGTGAAGGGAAAGAAGCGAAAGACGAGGGAAGAGAAGTATGACAGAGACGAAGAAGAAGCAGCAGAACAAGTAGAGGAACCCAGTAAACCAGCTATGGGTGACGAAAATGGAACACAAGGAAAAGAGGGCGAGCAATTTGAACTTGAGGGCATTCCAATTGCCCCAACAACTGACCAGAACCCGAAAAGCGGACCTGGGGTCATCTTTATCCTTGAGAAAGCTTCTTTGGAAATCGGCAAAGTTGGAAAGACTGAACAGCTTTTGAATTCTGATGATCATGCAAATTTCTTGAAGAAGAAGGGCAAAAACCCTGCTCATTATAGGCCTGATATCCTTCATCAGGCTCTCCTCATGGTTTTAGATAGCCCGATTAATAAAGCTGGGAGGTTGCGATGTGTGTATGTGAAGACCGAGGATGGTAAACTTATTGAGATTAAACCATATGTTCGTATCCCAAGGACGTTTAAGCGGTTCTCTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGCTGTTGGTAAGCGTGAGAAACTTATGCGTATGATCAAGAACCCTGTGACACAGTATTTACCTGTTAACTCCCGGAAAGTAGGACTCTCGTACAGTTCAGAGAAATTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATACGGACCTTGTTTTTGTGGTTGGTGCAATGGCTCATGGCAAAGTTGAGACGGACTATACTGATGATTTTGTATCAAGTAAGTTGATTGCCAATTGTGTTCTTTTCTGCTTTGGATTTTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

268

Amino Acids

29.99

Weight (kDa)

9.11

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	75 - 252	3.1e-61	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 487
AcsI	RAATTY	2 cut(s)	283, 301
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	3 cut(s)	113, 206, 358
AgsI	TTSAA	4 cut(s)	158, 283, 310, 653
AhdI	GACNNNNNGTC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	110, 239, 277, 398, 511
AluI	AGCT	5 cut(s)	110, 239, 277, 398, 511
Alw26I	GTCTC	2 cut(s)	57, 722
AlwNI	CAGNNNCTG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	8, 341
ApeKI	GCWGC	5 cut(s)	77, 508, 511, 665, 668
ApoI	RAATTY	2 cut(s)	283, 301
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	209, 685
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	16, 128
AvaII	GGWCC	2 cut(s)	209, 685
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	89, 498, 520, 652, 655
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	479
BclI	TGATCA	2 cut(s)	292, 567
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	57, 722
BfmI	CTRYAG	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	5 cut(s)	78, 509, 512, 666, 669
BlsI	GCNGC	5 cut(s)	79, 510, 513, 667, 670
Bme1390I	CCNGG	2 cut(s)	213, 607
Bme18I	GGWCC	2 cut(s)	209, 685
BmeRI	GACNNNNNGTC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	209, 685
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	213, 607
BmrI	ACTGGG	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	182, 251
BpuMI	CCSGG	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	212, 429, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 206, 358
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	212, 429, 473
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	113, 206, 358
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	89, 498, 520, 652, 655
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	2 cut(s)	10, 343
BsiSI	CCGG	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	113, 206, 358
BsmAI	GTCTC	2 cut(s)	57, 722
BsmBI	CGTCTC	2 cut(s)	57, 722
BsmI	GAATGC	2 cut(s)	168, 648
BsnI	GGCC	2 cut(s)	10, 343
Bsp143I	GATC	2 cut(s)	292, 567
BspACI	CCGC	2 cut(s)	207, 487
BspANI	GGCC	2 cut(s)	10, 343
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	212, 429, 473
BssMI	GATC	2 cut(s)	292, 567
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	588, 629
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	524
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	295, 570
BstMAI	GTCTC	2 cut(s)	57, 722
BstMBI	GATC	2 cut(s)	292, 567
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	211, 605
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	5 cut(s)	89, 498, 520, 652, 655
BstV2I	GAAGAC	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	10, 343
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	149
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	209, 685
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	4 cut(s)	296, 370, 502, 716
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	2 cut(s)	294, 569
DpnII	GATC	2 cut(s)	292, 567
DriI	GACNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	209, 685
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	2 cut(s)	57, 722
FaeI	CATG	4 cut(s)	299, 373, 505, 719
FatI	CATG	4 cut(s)	295, 369, 501, 715
FauNDI	CATATG	1 cut(s)	460
FbaI	TGATCA	2 cut(s)	292, 567
Fnu4HI	GCNGC	5 cut(s)	78, 509, 512, 666, 669
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	78, 509, 512, 666, 669
GluI	GCNGC	5 cut(s)	78, 509, 512, 666, 669
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	10, 343
HapII	CCGG	1 cut(s)	607
Hin1II	CATG	4 cut(s)	299, 373, 505, 719
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	1 cut(s)	618
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	2 cut(s)	16, 128
Hpy166II	GTNNAC	3 cut(s)	104, 440, 601
Hpy188I	TCNGA	2 cut(s)	289, 634
Hpy188III	TCNNGA	2 cut(s)	307, 571
Hpy8I	GTNNAC	3 cut(s)	104, 440, 601
HpyAV	CCTTC	3 cut(s)	16, 310, 362
HpyCH4III	ACNGT	2 cut(s)	588, 629
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	3 cut(s)	299, 508, 707
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	299, 373, 505, 719
Ksp22I	TGATCA	2 cut(s)	292, 567
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	292, 567
Lsp1109I	GCAGC	5 cut(s)	89, 498, 520, 652, 655
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	116, 580
MalI	GATC	2 cut(s)	294, 569
MboI	GATC	2 cut(s)	292, 567
MboII	GAAGA	6 cut(s)	59, 80, 83, 322, 325, 436
MfeI	CAATTG	2 cut(s)	174, 772
MluCI	AATT	6 cut(s)	152, 174, 283, 301, 638, 772
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	36, 85, 136, 157, 377, 396, 424
MseI	TTAA	4 cut(s)	390, 453, 483, 600
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	2 cut(s)	213, 607
MunI	CAATTG	2 cut(s)	174, 772
Mva1269I	GAATGC	2 cut(s)	168, 648
MvaI	CCWGG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	2 cut(s)	292, 567
NlaIII	CATG	4 cut(s)	299, 373, 505, 719
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	116, 580
PceI	AGGCCT	1 cut(s)	343
PctI	GAATGC	2 cut(s)	168, 648
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	5 cut(s)	79, 510, 513, 667, 670
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	209, 685
PstNI	CAGNNNCTG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SaqAI	TTAA	4 cut(s)	390, 453, 483, 600
SatI	GCNGC	5 cut(s)	78, 509, 512, 666, 669
Sau3AI	GATC	2 cut(s)	292, 567
Sau96I	GGNCC	2 cut(s)	209, 685
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	213, 607
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	2 cut(s)	209, 685
SmlI	CTYRAG	2 cut(s)	161, 230
SmoI	CTYRAG	2 cut(s)	161, 230
Sse9I	AATT	6 cut(s)	152, 174, 283, 301, 638, 772
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	207, 487
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	211, 605
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	588, 629
TaiI	ACGT	1 cut(s)	482
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	6 cut(s)	152, 174, 283, 301, 638, 772
Tru1I	TTAA	4 cut(s)	390, 453, 483, 600
Tru9I	TTAA	4 cut(s)	390, 453, 483, 600
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	116, 580
TseI	GCWGC	5 cut(s)	77, 508, 511, 665, 668
Tsp45I	GTSAC	2 cut(s)	116, 580
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	2 cut(s)	698, 746
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	209, 685
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	2 cut(s)	283, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.