Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001190

Physical Location & Seq

Genomic Coordinates Forward (+)

33103516 .. 33106895

Gene Structure 3380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAATGGCGCAGATGGGAAAGAGCGAGCTAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGGTTTGGTTAGTGGCAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAATGATGGAGTTTCACAAAGTGGCATTTTGTGATCTGCAGGCTCTTCACATGGTTTTAGATAGCCCGATTAATAAAGCTAGGAAGTTGCGATGTGTGTATATGAAGACCAAGGATGGTAAACTTATTGAGATTAAACCATATGTTCGTATCCCAAGGACGTTTAAGCTATTCTTTGGTGTCATGTTGCAGCTGCTACAGAAACTGAGTATATCTGTCGTTGGTAAGCGTGAGAAACTTATGCGTATGATCAAGAACCCTATGACACAGTATTTACCTGTTAACTCCCGGAAAGTAGGACTCTCGTACAGTTCAGAGAAACTAGTTAGCATTCAAAAATATGTTGCTGCTGCTGAAAACAATATGGACCTTGTTTTTGTGGAGTATGGTGCATACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGTATGGTAGTTTTGTGCTTTTATTTATTTATTTTGGTCTGCTATAGTGATCATGTTCAACACACTTCCTTTTTAGGCTATATTGCATGTATACGTAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000462 GO:0001510 GO:0001701 GO:0001824 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0017126 GO:0019843 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0070037 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

EMG1

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

9.77

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	55 - 180	1.1e-32	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57000
fragaria_vesca	FvH4_7g03130 FvH4_7g03130
malus_domestica	MD02G1295000.v1.1 MD03G1003900.v1.1 MD07G1030500.v1.1 MD14G1085000.v1.1
prunus_persica	Prupe.1G569200_v2.0.a1 Prupe.7G040700_v2.0.a1 Prupe.7G040700_v2.0.a1
pyrus_communis	pycom02g24800 pycom03g00390 pycom07g02220 pycom11g00350 pycom12g07800 pycom14g07450
rosa_chinensis	RchiOBHm_Chr1g0317791 RchiOBHm_Chr1g0324931 RchiOBHm_Chr2g0125441 RchiOBHm_Chr4g0421871
rosa_laevigata	RLG00000030168
rosa_multiflora	Rmu_co8495253.1_g000001 Rmu_sc0002447.1_g000012 Rmu_sc0004462.1_g000004 Rmu_sc0010303.1_g000001 Rmu_ssc0000240.1_g000047
rosa_roxburghii	Rroxscaffold_159G00433100 Rroxscaffold_1G00009460 Rroxscaffold_2G00079570 Rroxscaffold_2G00079580 Rroxscaffold_2G00127840 Rroxscaffold_3G00221990 Rroxscaffold_4G00325090 Rroxscaffold_4G00328380 Rroxscaffold_5G00346870
rosa_rugosa	Rorug01G0048600 Rorug01G0048700 Rorug01G0048800 Rorug03G0242300 Rorug05G0231300
rosa_samantha	Rh1AG029400 Rh1AG065000 Rh1AG260200 Rh1AG268400 Rh1BG053700 Rh1CG066400 Rh1DG071000 Rh2BG323900 Rh2DG580800 Rh5DG407100 Rh5DG421200
rosa_wichuraiana	Rw1G005440 Rw1G014820 Rw4G005800 Rw5G023610 Rw6G020160 Rw7G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	643, 649
AcuI	CTGAAG	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	458, 611
AhlI	ACTAGT	1 cut(s)	445
AluBI	AGCT	7 cut(s)	31, 35, 59, 203, 292, 316, 531
AluI	AGCT	7 cut(s)	31, 35, 59, 203, 292, 316, 531
AlwNI	CAGNNNCTG	1 cut(s)	328
ApeKI	GCWGC	5 cut(s)	59, 313, 316, 470, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	412
AsuNHI	GCTAGC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	46, 303, 325, 457, 460
BccI	CCATC	4 cut(s)	10, 124, 233, 545
BciVI	GTATCC	1 cut(s)	284
BclI	TGATCA	2 cut(s)	372, 601
BcnI	CCSGG	1 cut(s)	412
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	3 cut(s)	32, 204, 446
BfmI	CTRYAG	4 cut(s)	60, 161, 320, 595
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	60, 314, 317, 471, 474
BlsI	GCNGC	5 cut(s)	61, 315, 318, 472, 475
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	531
BmtI	GCTAGC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	647
BsaJI	CCNNGG	3 cut(s)	51, 234, 278
BseDI	CCNNGG	3 cut(s)	51, 234, 278
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	320
BseXI	GCAGC	5 cut(s)	46, 303, 325, 457, 460
BseYI	CCCAGC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	453
Bsp143I	GATC	3 cut(s)	157, 372, 601
BspCNI	CTCAG	1 cut(s)	321
BspMAI	CTGCAG	2 cut(s)	64, 165
BspOI	GCTAGC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	51, 234, 278
BssMI	GATC	3 cut(s)	157, 372, 601
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	3 cut(s)	51, 234, 278
Bst1107I	GTATAC	1 cut(s)	644
Bst4CI	ACNGT	2 cut(s)	393, 434
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	29, 33, 165, 546
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	160, 375, 604
BstMBI	GATC	3 cut(s)	157, 372, 601
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	4 cut(s)	60, 161, 320, 595
BstSNI	TACGTA	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	46, 303, 325, 457, 460
BstV2I	GAAGAC	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	4 cut(s)	29, 33, 165, 546
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	175, 307, 605, 639
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	159, 374, 603
DpnII	GATC	3 cut(s)	157, 372, 601
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco105I	TACGTA	1 cut(s)	647
Eco130I	CCWWGG	3 cut(s)	51, 234, 278
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	51, 234, 278
ErhI	CCWWGG	3 cut(s)	51, 234, 278
FaeI	CATG	4 cut(s)	178, 310, 608, 642
FalI	AAGNNNNNCTT	4 cut(s)	281, 313, 515, 547
FatI	CATG	4 cut(s)	174, 306, 604, 638
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	2 cut(s)	372, 601
FblI	GTMKAC	2 cut(s)	643, 649
Fnu4HI	GCNGC	5 cut(s)	60, 314, 317, 471, 474
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	5 cut(s)	60, 314, 317, 471, 474
FspBI	CTAG	3 cut(s)	32, 204, 446
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	5 cut(s)	60, 314, 317, 471, 474
GsaI	CCCAGC	1 cut(s)	96
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	178, 310, 608, 642
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	1 cut(s)	423
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	412
Hpy166II	GTNNAC	4 cut(s)	245, 406, 644, 650
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	123, 376
Hpy8I	GTNNAC	4 cut(s)	245, 406, 644, 650
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	393, 434
HpyCH4IV	ACGT	2 cut(s)	284, 646
HpyCH4V	TGCA	6 cut(s)	62, 163, 313, 515, 548, 638
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	284, 646
Hsp92II	CATG	4 cut(s)	178, 310, 608, 642
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	2 cut(s)	372, 601
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	157, 372, 601
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	48, 57, 78, 102, 108, 149, 414, 425
Lsp1109I	GCAGC	5 cut(s)	46, 303, 325, 457, 460
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	3 cut(s)	32, 204, 446
MaeII	ACGT	2 cut(s)	284, 646
MalI	GATC	3 cut(s)	159, 374, 603
MboI	GATC	3 cut(s)	157, 372, 601
MboII	GAAGA	2 cut(s)	161, 241
MlyI	GAGTC	1 cut(s)	417
MseI	TTAA	4 cut(s)	195, 258, 288, 405
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	412
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	3 cut(s)	157, 372, 601
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	4 cut(s)	178, 310, 608, 642
NspI	RCATGY	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	61, 315, 318, 472, 475
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Ppu21I	YACGTR	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	64, 165
PstNI	CAGNNNCTG	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	195, 258, 288, 405
SatI	GCNGC	5 cut(s)	60, 314, 317, 471, 474
Sau3AI	GATC	3 cut(s)	157, 372, 601
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	4 cut(s)	60, 161, 320, 595
SinI	GGWCC	1 cut(s)	490
SnaBI	TACGTA	1 cut(s)	647
SpeI	ACTAGT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	32, 204, 446
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	3 cut(s)	51, 234, 278
TaaI	ACNGT	2 cut(s)	393, 434
TaiI	ACGT	2 cut(s)	287, 649
Tru1I	TTAA	4 cut(s)	195, 258, 288, 405
Tru9I	TTAA	4 cut(s)	195, 258, 288, 405
TseI	GCWGC	5 cut(s)	59, 313, 316, 470, 473
TspDTI	ATGAA	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	195
XceI	RCATGY	1 cut(s)	642
XmiI	GTMKAC	2 cut(s)	643, 649
XspI	CTAG	3 cut(s)	32, 204, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.