Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

19764396 .. 19771932

Gene Structure 7537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATTGATTTCTGTTGCTTTGATTCGATTATAGGGTTGAGGCTTCTGGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGAGATTGCAGATCGTATGTGCAGATTTGGTGCCATTGATCTTATCTGTGTCGATTCTGTCTCAGCTCTCATTCCAAGAGCAGAAATTGAAGGTGAGATCAGGATGCAACAAATGGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCGGGTCGGTGTACGAGTGCAAAAGAGTAAGGATCTTGTTGAAGCATCTATATCTTCATCTAGGAGACAATGCTCTCAGGTGGAATTCAACTCAACTTTTCAGCTCAAAGATGGTTTTGGTGCACTTCGACATACAAAAATGAGCTGTGAATATGAAGTAACGGTATGCTGGCGCGTGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

163

Amino Acids

18.18

Weight (kDa)

5.8

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	17 - 79	3.6e-22	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	1 cut(s)	477
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	57, 212, 344, 391
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	188, 406, 447
AluI	AGCT	3 cut(s)	188, 406, 447
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	3 cut(s)	187, 279, 361
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	427
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	187, 279, 361
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	216, 356
BpuEI	CTTGAG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	198, 392
BseSI	GKGCMC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	3 cut(s)	187, 279, 361
BsmBI	CGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	103, 133, 160, 219, 334
BspCNI	CTCAG	2 cut(s)	197, 391
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	152
BssMI	GATC	5 cut(s)	103, 133, 160, 219, 334
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	98, 473
BstDEI	CTNAG	2 cut(s)	184, 378
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	5 cut(s)	106, 136, 163, 222, 337
BstMAI	GTCTC	3 cut(s)	187, 279, 361
BstMBI	GATC	5 cut(s)	103, 133, 160, 219, 334
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	98, 473
CfoI	GCGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	5 cut(s)	43, 100, 188, 406, 447
CviKI_1	RGCY	5 cut(s)	43, 100, 188, 406, 447
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	184, 378
DpnI	GATC	5 cut(s)	105, 135, 162, 221, 336
DpnII	GATC	5 cut(s)	103, 133, 160, 219, 334
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	110
FaiI	YATR	8 cut(s)	32, 52, 108, 140, 353, 435, 456, 469
FatI	CATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	238
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	23, 176
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	314, 425
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	314, 425
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	131, 144, 229, 322, 425
HpyF3I	CTNAG	2 cut(s)	184, 378
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	103, 133, 160, 219, 334
LpnPI	CCDG	9 cut(s)	32, 110, 114, 208, 230, 246, 257, 365, 457
LweI	GCATC	2 cut(s)	216, 356
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	5 cut(s)	105, 135, 162, 221, 336
MboI	GATC	5 cut(s)	103, 133, 160, 219, 334
MboII	GAAGA	1 cut(s)	348
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	3 cut(s)	207, 294, 386
MnlI	CCTC	2 cut(s)	33, 283
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	477
NdeII	GATC	5 cut(s)	103, 133, 160, 219, 334
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	23, 176
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
Sau3AI	GATC	5 cut(s)	103, 133, 160, 219, 334
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	6 cut(s)	190, 217, 256, 384, 408, 449
SfaNI	GCATC	2 cut(s)	216, 356
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	207, 294, 386
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	26, 174, 430
TasI	AATT	3 cut(s)	207, 294, 386
TfiI	GAWTC	2 cut(s)	23, 176
TspDTI	ATGAA	2 cut(s)	348, 471
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.