Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

34657901 .. 34665982

Gene Structure 8082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAATCCTTTTTATTTGGTTTCACCTATTGTCCTATAGTTATCTGTAAATCACAACCAAATAAACAATTTCACCACAAAGAAATCACGAAACTAGGAATCAAAATATTTGAATCAGACAACATGTTTACTAAACTTACGTTGTATAAGGTGGTTAAAATTTTGAAGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGATCGAGAGTTTGCAGATCGTATGTGCAGATCTGGTGCCATTGATCTTATCAGTGTCTATTCTGGTGAGATCGGGATGCAACAAATGTGTTTGCAAGCATGCTTTATGACTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATCTAGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCAGGTCCGTGTACGAGTGCAAAAGAGTAAGTCATCTAGGAGACAATGCTCTCAGGCGGAATTCAACTCAACTTTTCAGCTCAAAGATGGTTCTGGTGCACTTGTAAGTAAATACACTTTGTTTAATCCATTCAGCAGCTGCACTCAACTAATGGAAAGTGTTTTATATAAGATTCCATTGAACAACAGACAAAATAAAAAAATGTTGTCTGACACACTTAACATACAACAGCTTAAAACTACAACGGCTCACTTTACAACGGTGGGTCTCCAAATCCCACAACGGTTTTATGCCGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

291

Amino Acids

32.8

Weight (kDa)

9.27

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	43 - 204	2.4e-41	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	159, 632
AfaI	GTAC	2 cut(s)	409, 585
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	6 cut(s)	113, 166, 225, 424, 637, 754
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	4 cut(s)	169, 652, 711, 805
AluI	AGCT	4 cut(s)	169, 652, 711, 805
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	3 cut(s)	549, 607, 845
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	2 cut(s)	708, 711
ApoI	RAATTY	2 cut(s)	159, 632
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	16, 65, 368
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	2 cut(s)	698, 720
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	2 cut(s)	834, 851
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	549, 607, 845
BfaI	CTAG	3 cut(s)	95, 477, 609
BfmI	CTRYAG	2 cut(s)	36, 528
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	2 cut(s)	709, 712
BlsI	GCNGC	2 cut(s)	710, 713
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	184, 357
BsaI	GGTCTC	1 cut(s)	845
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	515
BseGI	GGATG	2 cut(s)	372, 410
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	519, 638
BseNI	ACTGG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	698, 720
BsgI	GTGCAG	2 cut(s)	337, 697
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	673
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	549, 607, 845
BsmBI	CGTCTC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
BspACI	CCGC	1 cut(s)	629
BspCNI	CTCAG	2 cut(s)	518, 637
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	845
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	835, 858
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	266, 387, 391
BstDEI	CTNAG	2 cut(s)	505, 624
BstF5I	GGATG	2 cut(s)	372, 410
BstKTI	GATC	7 cut(s)	214, 274, 295, 310, 323, 337, 363
BstMAI	GTCTC	3 cut(s)	549, 607, 845
BstMBI	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	3 cut(s)	127, 206, 393
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	36, 528
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	698, 720
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	372, 410
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	266, 387, 391
CaiI	CAGNNNCTG	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	408, 584
CviAII	CATG	4 cut(s)	124, 203, 275, 390
CviJI	RGCY	6 cut(s)	169, 268, 652, 711, 805, 821
CviKI_1	RGCY	6 cut(s)	169, 268, 652, 711, 805, 821
CviQI	GTAC	2 cut(s)	408, 584
DdeI	CTNAG	2 cut(s)	505, 624
DpnI	GATC	7 cut(s)	213, 273, 294, 309, 322, 336, 362
DpnII	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
EciI	GGCGGA	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	4 cut(s)	127, 206, 278, 393
FatI	CATG	4 cut(s)	123, 202, 274, 389
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	709, 712
FokI	GGATG	2 cut(s)	379, 417
Fsp4HI	GCNGC	2 cut(s)	709, 712
FspBI	CTAG	3 cut(s)	95, 477, 609
GluI	GCNGC	2 cut(s)	709, 712
Hin1II	CATG	4 cut(s)	127, 206, 278, 393
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	99, 113, 424, 460, 745
HphI	GGTGA	3 cut(s)	16, 65, 368
Hpy166II	GTNNAC	3 cut(s)	129, 584, 671
Hpy188I	TCNGA	4 cut(s)	118, 255, 784, 875
Hpy188III	TCNNGA	6 cut(s)	88, 296, 364, 421, 464, 477
Hpy8I	GTNNAC	3 cut(s)	129, 584, 671
HpyCH4III	ACNGT	2 cut(s)	835, 858
HpyCH4IV	ACGT	2 cut(s)	140, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	505, 624
HpySE526I	ACGT	2 cut(s)	140, 523
Hsp92II	CATG	4 cut(s)	127, 206, 278, 393
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
Lsp1109I	GCAGC	2 cut(s)	698, 720
LweI	GCATC	2 cut(s)	184, 357
MaeI	CTAG	3 cut(s)	95, 477, 609
MaeII	ACGT	2 cut(s)	140, 523
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	7 cut(s)	213, 273, 294, 309, 322, 336, 362
MboI	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	5 cut(s)	68, 159, 483, 564, 632
MnlI	CCTC	4 cut(s)	167, 473, 514, 553
MseI	TTAA	5 cut(s)	156, 491, 696, 792, 807
MspA1I	CMGCKG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
NlaIII	CATG	4 cut(s)	127, 206, 278, 393
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	3 cut(s)	127, 206, 393
PaeI	GCATGC	1 cut(s)	393
PciI	ACATGT	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	99, 113, 424, 460, 745
PkrI	GCNGC	2 cut(s)	710, 713
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	711
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	2 cut(s)	409, 585
RsaNI	GTAC	2 cut(s)	408, 584
SaqAI	TTAA	5 cut(s)	156, 491, 696, 792, 807
SatI	GCNGC	2 cut(s)	709, 712
Sau3AI	GATC	7 cut(s)	211, 271, 292, 307, 320, 334, 360
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	673
SetI	ASST	9 cut(s)	29, 143, 153, 171, 526, 579, 654, 713, 807
SfaNI	GCATC	2 cut(s)	184, 357
SfcI	CTRYAG	2 cut(s)	36, 528
SinI	GGWCC	1 cut(s)	577
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	5 cut(s)	68, 159, 483, 564, 632
SsiI	CCGC	1 cut(s)	629
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	3 cut(s)	95, 477, 609
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	835, 858
TaiI	ACGT	2 cut(s)	143, 526
TaqI	TCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	68, 159, 483, 564, 632
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	5 cut(s)	99, 113, 424, 460, 745
Tru1I	TTAA	5 cut(s)	156, 491, 696, 792, 807
Tru9I	TTAA	5 cut(s)	156, 491, 696, 792, 807
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	708, 711
Tsp45I	GTSAC	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	669
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	2 cut(s)	159, 632
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	3 cut(s)	127, 206, 393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XspI	CTAG	3 cut(s)	95, 477, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.