Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

36674709 .. 36676886

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGTTTAGTGCTGAGAAGCAACAGCGCAAGCATGACATATTATATGTCCACCACCCACTCCCTCCCCTACTCACACTCATTCCACTCCTGCTCTCTCCCACACCGACACCGCTTCAACGTTCAATCAATGGCGGTCAAAAGGGTCCGCTCTGAGCTCCAAGTAAAAGTCAACGGCTCTCTCTCCGCTGCTGACTCCGACCAACTCTTCCTCGACCGCCAAAAAGCACCGGAGGCGGCCATGAATGATATCAATAGCTCATTCGGCAAGGGAAGTGTGACAAGACTAGGAAGCGCTGGTGGAGCTTTGGTTGAAACGTTCCCCAGTGGTTGCTTGACATTGGACCTTGCTTTAGGTGGTGGCCTCCCAAAAGGGAGAATTATATTTGGACCAGAAAGTAGTGGAAAGACAACTCTAGCACTCCATGCAATCTCAGATGTGCAGAGGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGGCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGTGAAATGGCACTTGAGATTGCAGATCGTATGTGCAGATCTGGTGCCATTGATCTTATCTGTGTCGATTCTGTCTCAGCTCTCACTCCACGAGCAGAAATTGAAGAAACTTTTTTTTTTTTTTTTTTTTTTTCTGCTGGTAGTTTTGAATGTCAGATATTCGATTGCTCATATAAGTCAAATGACTTTCTGGTCTTTTACATAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

254

Amino Acids

27.48

Weight (kDa)

5.57

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	76 - 220	2.4e-57	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	6 cut(s)	112, 134, 148, 186, 217, 236
AclI	AACGTT	2 cut(s)	120, 317
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	237
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	6 cut(s)	118, 125, 314, 504, 659, 704
AluBI	AGCT	4 cut(s)	157, 258, 305, 635
AluI	AGCT	4 cut(s)	157, 258, 305, 635
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	2 cut(s)	237, 361
ApeKI	GCWGC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	29, 296
AspS9I	GGNCC	3 cut(s)	145, 343, 389
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	3 cut(s)	145, 343, 389
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	2 cut(s)	287, 416
BfoI	RGCGCY	1 cut(s)	297
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	2 cut(s)	189, 237
BlsI	GCNGC	2 cut(s)	190, 238
Bme18I	GGWCC	3 cut(s)	145, 343, 389
BmgT120I	GGNCC	3 cut(s)	145, 343, 389
BmiI	GGNNCC	2 cut(s)	146, 601
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	590
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	4 cut(s)	5, 144, 447, 645
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	2 cut(s)	461, 610
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	239, 363
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	239, 363
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	490, 550, 580, 593, 607
BspACI	CCGC	6 cut(s)	112, 134, 148, 186, 217, 236
BspANI	GGCC	2 cut(s)	239, 363
BspCNI	CTCAG	4 cut(s)	6, 145, 446, 644
BspLI	GGNNCC	2 cut(s)	146, 601
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	5 cut(s)	490, 550, 580, 593, 607
BssSI	CACGAG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	645
Bst6I	CTCTTC	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	31, 545
BstDEI	CTNAG	4 cut(s)	14, 153, 433, 631
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	29, 296
BstKTI	GATC	5 cut(s)	493, 553, 583, 596, 610
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	5 cut(s)	490, 550, 580, 593, 607
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 264, 302, 425
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	239, 363
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	31, 545
CfoI	GCGC	2 cut(s)	29, 296
Cfr13I	GGNCC	3 cut(s)	145, 343, 389
CviAII	CATG	5 cut(s)	34, 241, 425, 482, 554
DdeI	CTNAG	4 cut(s)	14, 153, 433, 631
DpnI	GATC	5 cut(s)	492, 552, 582, 595, 609
DpnII	GATC	5 cut(s)	490, 550, 580, 593, 607
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	145, 343, 389
Eco47III	AGCGCT	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	5 cut(s)	37, 244, 428, 485, 557
FatI	CATG	5 cut(s)	33, 240, 424, 481, 553
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	189, 237
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	189, 237
FspBI	CTAG	2 cut(s)	287, 416
GlaI	GCGC	2 cut(s)	28, 295
GluI	GCNGC	2 cut(s)	189, 237
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	239, 363
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	2 cut(s)	29, 296
Hin1II	CATG	5 cut(s)	37, 244, 428, 485, 557
Hin6I	GCGC	2 cut(s)	27, 294
HinP1I	GCGC	2 cut(s)	27, 294
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	194, 623
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	51, 172
Hpy188I	TCNGA	5 cut(s)	154, 199, 436, 534, 711
Hpy8I	GTNNAC	2 cut(s)	51, 172
HpyCH4IV	ACGT	2 cut(s)	120, 317
HpyCH4V	TGCA	5 cut(s)	428, 442, 476, 578, 591
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 264, 302, 425
HpyF3I	CTNAG	4 cut(s)	14, 153, 433, 631
HpySE526I	ACGT	2 cut(s)	120, 317
Hsp92II	CATG	5 cut(s)	37, 244, 428, 485, 557
HspAI	GCGC	2 cut(s)	27, 294
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	490, 550, 580, 593, 607
LmnI	GCTCC	2 cut(s)	162, 302
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	287, 416
MaeII	ACGT	2 cut(s)	120, 317
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	5 cut(s)	492, 552, 582, 595, 609
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	5 cut(s)	490, 550, 580, 593, 607
MboII	GAAGA	2 cut(s)	199, 671
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	378, 654
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	74, 221, 226, 374, 438, 446
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	233, 264, 302, 425
NdeII	GATC	5 cut(s)	490, 550, 580, 593, 607
NlaIII	CATG	5 cut(s)	37, 244, 428, 485, 557
NlaIV	GGNNCC	2 cut(s)	146, 601
NmuCI	GTSAC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	190, 238
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	159
Psp1406I	AACGTT	2 cut(s)	120, 317
PspN4I	GGNNCC	2 cut(s)	146, 601
PspPI	GGNCC	3 cut(s)	145, 343, 389
PsuI	RGATCY	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	2 cut(s)	189, 237
Sau3AI	GATC	5 cut(s)	490, 550, 580, 593, 607
Sau96I	GGNCC	3 cut(s)	145, 343, 389
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	123, 159, 260, 307, 320, 348, 358, 637
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	3 cut(s)	145, 343, 389
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	378, 654
SsiI	CCGC	6 cut(s)	112, 134, 148, 186, 217, 236
SspMI	CTAG	2 cut(s)	287, 416
SstI	GAGCTC	1 cut(s)	159
TaiI	ACGT	2 cut(s)	123, 320
TaqI	TCGA	3 cut(s)	213, 621, 717
TasI	AATT	2 cut(s)	378, 654
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	623
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	3 cut(s)	145, 343, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XspI	CTAG	2 cut(s)	287, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.