FvH4_1g27813

DNA repair protein recA homolog 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
19404902 .. 19411876
6975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27813.t1

Sequence Viewer

Length: 1224 bp
ATGACGCATTACATGTCCACCCCCACTCCCCTCTTATTCCACTCTTGCTCCCTCCCACAGCGCTTCAACCTTCAATCAATGGCGGCCAAAAGGGTCCGCTCTGAGCTCCAAGTCAAAGTGAACGGTGCTCTCTCCACTGCCGACTCCGACTCGCTCTTCCTCGACCGCCAGAAAGCTCTTGAGGCAGCCATGAACGATATAAACAGCTCCTTCGGCAAAGGAAGTGTTACCAGATTAGGCAGCGCCGGCGGAGCTTTGGTCGAAACTTTCCCCAGTGGTTGCTTGACATTGGACCTTGCCTTAGGTGGTGGCCTTCCCAAAGGGAGAATTGTGGAGATATTTGGTCCAGAAAGTAGTGGAAAGACAACTCTAGCACTCCATGCAATCGCAGAGGTGCAGAGGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTTGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGAGATTGCAGATCGAATGTGCAGATCTGGTGCCATTGATCTTATATGTGTTGATTCTGTCTCGGCTCTCACTCCACGAGCAGAGATTGAAGGTGAGATTGGGATGCAGCAAATGGGTTTGCAAGCACGCCTTATGAGCCAAGCATTGCGCAAAATGTCAGGAAATGCATCTAAAGCTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTACGGGAATCCAGAAGTGACATCTGGAGGAATTGCATTGAAGTTCTTTGCGTCAGTCCGCCTGGAAATACGATCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCGGGTCCGTGTACGAGTGCAGAAGAGTAAGGTTTCGAGGCCATACAAACAAGCGGAATTTGAAATTGTGTTTGGAGAGGGAGTAAGTAAATTGGGTTGCATTTTGGATTGTGCTGAAATGATGGATGTTATAGTGAAGAAGGGATCTTGGTATAGCTATGGGGACCACAGGTTGGGTCAAGGAAGAGATAAATCATTGCAGTACTTGAGAGAGAACCCTGTTCTTCTTGATGAAATAGAGAAGATTGTTCGCTCCACAATGACAGATGCAACTGGACAGGTAGGCTCATTCCATACAAGGCACTTGCCAGTAACACATCAAGATGAAGATGATTTCGAAGATGTCCAATGA

Protein Analysis

408

Amino Acids

44.28

Weight (kDa)

6.34

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecA_N PF00154 58 - 320 6.5e-115 RecA N-terminal domain
Rad51 PF08423 92 - 276 3.6e-07 Rad51
RecA_C PF21096 323 - 378 4.2e-22 RecA C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 1045
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 6 cut(s) 83, 97, 166, 249, 811, 926
AclWI GGATC 2 cut(s) 440, 1024
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 929
AfaI GTAC 3 cut(s) 709, 885, 1076
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 509, 1045
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 8 cut(s) 67, 74, 459, 482, 614, 724, 793, 935
AjnI CCWGG 1 cut(s) 813
AjuI GAANNNNNNNTTGG 4 cut(s) 606, 638, 927, 959
AluBI AGCT 6 cut(s) 106, 176, 207, 254, 701, 1029
AluI AGCT 6 cut(s) 106, 176, 207, 254, 701, 1029
Alw21I GWGCWC 2 cut(s) 108, 130
Alw26I GTCTC 2 cut(s) 589, 849
AlwI GGATC 2 cut(s) 440, 1024
Aor51HI AGCGCT 1 cut(s) 62
AoxI GGCC 3 cut(s) 84, 310, 911
ApeKI GCWGC 3 cut(s) 185, 240, 631
ApoI RAATTY 1 cut(s) 929
AspLEI GCGC 3 cut(s) 63, 245, 675
AspS9I GGNCC 5 cut(s) 94, 292, 344, 877, 1036
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 1209
AvaII GGWCC 5 cut(s) 94, 292, 344, 877, 1036
AxyI CCTNAGG 1 cut(s) 301
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 108
BauI CACGAG 1 cut(s) 600
Bbv12I GWGCWC 2 cut(s) 108, 130
BbvI GCAGC 3 cut(s) 197, 252, 643
BccI CCATC 1 cut(s) 988
BciT130I CCWGG 1 cut(s) 815
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 589, 849
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 2 cut(s) 64, 246
BglII AGATCT 1 cut(s) 548
BisI GCNGC 4 cut(s) 84, 186, 241, 632
BlsI GCNGC 4 cut(s) 85, 187, 242, 633
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 5 cut(s) 94, 292, 344, 877, 1036
BmgT120I GGNCC 5 cut(s) 94, 292, 344, 877, 1036
BmiI GGNNCC 4 cut(s) 95, 556, 878, 1037
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 4 cut(s) 418, 618, 701, 1129
BmuI ACTGGG 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 798
Bpu14I TTCGAA 1 cut(s) 1209
BpuEI CTTGAG 3 cut(s) 200, 545, 1099
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 1045
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 273, 1150, 1181
Bse21I CCTNAGG 1 cut(s) 301
Bse3DI GCAATG 2 cut(s) 668, 1067
BseBI CCWGG 1 cut(s) 815
BseGI GGATG 3 cut(s) 633, 710, 1003
BseLI CCNNNNNNNGG 2 cut(s) 509, 1045
BseMI GCAATG 2 cut(s) 668, 1067
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 273, 1150, 1181
BseXI GCAGC 3 cut(s) 197, 252, 643
BsgI GTGCAG 3 cut(s) 416, 565, 911
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 86, 312, 913
BshNI GGYRCC 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 108, 130
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 2 cut(s) 509, 1045
BsmAI GTCTC 2 cut(s) 589, 849
BsmBI CGTCTC 1 cut(s) 849
BsmFI GGGAC 1 cut(s) 1049
BsnI GGCC 3 cut(s) 86, 312, 913
Bsp119I TTCGAA 1 cut(s) 1209
Bsp1286I GDGCHC 2 cut(s) 108, 130
Bsp143I GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
BspACI CCGC 6 cut(s) 83, 97, 166, 249, 811, 926
BspANI GGCC 3 cut(s) 86, 312, 913
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 95, 556, 878, 1037
BspPI GGATC 2 cut(s) 440, 1024
BspQI GCTCTTC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 1209
BspT107I GGYRCC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 668, 1067
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 3 cut(s) 273, 1150, 1181
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 3 cut(s) 161, 890, 1051
BstAPI GCANNNNNTGC 2 cut(s) 380, 437
BstBI TTCGAA 1 cut(s) 1209
BstC8I GCNNGC 4 cut(s) 247, 500, 648, 652
BstDEI CTNAG 2 cut(s) 102, 301
BstF5I GGATG 3 cut(s) 633, 710, 1003
BstH2I RGCGCY 2 cut(s) 64, 246
BstHHI GCGC 3 cut(s) 63, 245, 675
BstKTI GATC 7 cut(s) 448, 508, 538, 551, 565, 827, 1019
BstMAI GTCTC 2 cut(s) 589, 849
BstMBI GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 8 cut(s) 182, 213, 246, 251, 380, 437, 660, 698
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 2 cut(s) 16, 440
BstSCI CCNGG 1 cut(s) 813
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 3 cut(s) 197, 252, 643
BstX2I RGATCY 2 cut(s) 548, 1016
BstYI RGATCY 2 cut(s) 548, 1016
Bsu36I CCTNAGG 1 cut(s) 301
BsuRI GGCC 3 cut(s) 86, 312, 913
BtsCI GGATG 3 cut(s) 633, 710, 1003
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 280
Cac8I GCNNGC 4 cut(s) 247, 500, 648, 652
CfoI GCGC 3 cut(s) 63, 245, 675
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 5 cut(s) 94, 292, 344, 877, 1036
CseI GACGC 2 cut(s) 13, 792
Csp6I GTAC 3 cut(s) 708, 884, 1075
CviAII CATG 5 cut(s) 13, 190, 380, 437, 509
CviQI GTAC 3 cut(s) 708, 884, 1075
DdeI CTNAG 2 cut(s) 102, 301
DpnI GATC 7 cut(s) 447, 507, 537, 550, 564, 826, 1018
DpnII GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 161, 890, 1051
EarI CTCTTC 3 cut(s) 161, 890, 1051
EciI GGCGGA 2 cut(s) 264, 800
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 5 cut(s) 94, 292, 344, 877, 1036
Eco47III AGCGCT 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 813
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 849
FaeI CATG 5 cut(s) 16, 193, 383, 440, 512
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FaqI GGGAC 1 cut(s) 1049
FatI CATG 5 cut(s) 12, 189, 379, 436, 508
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 4 cut(s) 84, 186, 241, 632
FokI GGATG 3 cut(s) 640, 717, 1010
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 84, 186, 241, 632
FspBI CTAG 1 cut(s) 371
FspI TGCGCA 1 cut(s) 674
GlaI GCGC 3 cut(s) 62, 244, 674
GluI GCNGC 4 cut(s) 84, 186, 241, 632
GsuI CTGGAG 1 cut(s) 798
HaeII RGCGCY 2 cut(s) 64, 246
HaeIII GGCC 3 cut(s) 86, 312, 913
HapII CCGG 1 cut(s) 246
HgaI GACGC 2 cut(s) 13, 792
HhaI GCGC 3 cut(s) 63, 245, 675
Hin1II CATG 5 cut(s) 16, 193, 383, 440, 512
Hin6I GCGC 3 cut(s) 61, 243, 673
HinP1I GCGC 3 cut(s) 61, 243, 673
HinfI GANTC 5 cut(s) 143, 149, 578, 724, 760
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 3 cut(s) 18, 121, 884
Hpy188I TCNGA 3 cut(s) 103, 148, 489
Hpy188III TCNNGA 8 cut(s) 179, 347, 684, 721, 764, 777, 1100, 1193
Hpy8I GTNNAC 3 cut(s) 18, 121, 884
HpyAV CCTTC 5 cut(s) 80, 220, 323, 608, 1006
HpyCH4III ACNGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 213, 246, 251, 380, 437, 660, 698
HpyF3I CTNAG 2 cut(s) 102, 301
Hsp92II CATG 5 cut(s) 16, 193, 383, 440, 512
HspAI GCGC 3 cut(s) 61, 243, 673
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 5 cut(s) 53, 111, 212, 251, 1130
Lsp1109I GCAGC 3 cut(s) 197, 252, 643
LweI GCATC 4 cut(s) 418, 618, 701, 1129
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 3 cut(s) 226, 769, 1183
MalI GATC 7 cut(s) 447, 507, 537, 550, 564, 826, 1018
MbiI CCGCTC 1 cut(s) 99
MboI GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
MboII GAAGA 8 cut(s) 148, 907, 1021, 1068, 1088, 1126, 1211, 1223
MflI RGATCY 2 cut(s) 548, 1016
MhlI GDGCHC 2 cut(s) 108, 130
MluCI AATT 6 cut(s) 327, 783, 864, 929, 936, 962
MlyI GAGTC 2 cut(s) 137, 143
MmeI TCCRAC 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 694
MreI CGCCGGCG 1 cut(s) 245
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 1194
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 815
MwoI GCNNNNNNNGC 8 cut(s) 182, 213, 246, 251, 380, 437, 660, 698
NaeI GCCGGC 1 cut(s) 247
NdeII GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 5 cut(s) 16, 193, 383, 440, 512
NlaIV GGNNCC 4 cut(s) 95, 556, 878, 1037
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 769
NsbI TGCGCA 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 16, 440
NspV TTCGAA 1 cut(s) 1209
PciI ACATGT 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 578, 724, 760
PflMI CCANNNNNTGG 1 cut(s) 1045
PkrI GCNGC 4 cut(s) 85, 187, 242, 633
PleI GAGTC 2 cut(s) 137, 143
PpsI GAGTC 2 cut(s) 137, 143
PscI ACATGT 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 813
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 4 cut(s) 95, 556, 878, 1037
PspPI GGNCC 5 cut(s) 94, 292, 344, 877, 1036
PsuI RGATCY 2 cut(s) 548, 1016
RsaI GTAC 3 cut(s) 709, 885, 1076
RsaNI GTAC 3 cut(s) 708, 884, 1075
RseI CAYNNNNRTG 1 cut(s) 1194
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 4 cut(s) 84, 186, 241, 632
Sau3AI GATC 7 cut(s) 445, 505, 535, 548, 562, 824, 1016
Sau96I GGNCC 5 cut(s) 94, 292, 344, 877, 1036
ScaI AGTACT 1 cut(s) 1076
SchI GAGTC 2 cut(s) 137, 143
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 108, 130
SfaNI GCATC 4 cut(s) 418, 618, 701, 1129
SfcI CTRYAG 1 cut(s) 828
SfuI TTCGAA 1 cut(s) 1209
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 5 cut(s) 94, 292, 344, 877, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1194
SmlI CTYRAG 3 cut(s) 179, 524, 1078
SmoI CTYRAG 3 cut(s) 179, 524, 1078
Sse9I AATT 6 cut(s) 327, 783, 864, 929, 936, 962
SsiI CCGC 6 cut(s) 83, 97, 166, 249, 811, 926
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 5 cut(s) 162, 261, 538, 908, 1209
TasI AATT 6 cut(s) 327, 783, 864, 929, 936, 962
TatI WGTACW 2 cut(s) 707, 1074
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 578, 724, 760
TscAI CASTG 2 cut(s) 142, 280
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 3 cut(s) 185, 240, 631
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 206, 1119, 1212
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 2 cut(s) 142, 280
Van91I CCANNNNNTGG 1 cut(s) 1045
VpaK11BI GGWCC 5 cut(s) 94, 292, 344, 877, 1036
XapI RAATTY 1 cut(s) 929
XceI RCATGY 2 cut(s) 16, 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XspI CTAG 1 cut(s) 371
ZrmI AGTACT 1 cut(s) 1076
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.