Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

53132228 .. 53136998

Gene Structure 4771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTTGATGTAGAAAATCTGATTGTCTGCCTGCCTGATCATGGCGAAATGGCACTTGAGATTGCAGATCGTATGTGCAGATCTGGTGCCATTGATCTTATCTGTGTCGATTCTCTCTCAGCTCTCACTCCACGAGCAGAAATTGAAGGTGAGATCGAGATGCAACAAATGGTTTTGCAAGCAAGCTTTATGAGCCAAGCTTTGCGCAAAATGTCAGGAAATGCATCTAAAGCTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATCTGGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCGGGTCTGTGTACGAGTGCAAAAGAGAATCCTCGATGGCCACAGTTTCTCTGAGTCTATCCCTTACACTATAGGATCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

179

Amino Acids

19.52

Weight (kDa)

5.65

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	2 - 161	2.3e-64	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	137
AclWI	GGATC	2 cut(s)	23, 538
AcoI	YGGCCR	1 cut(s)	493
AfaI	GTAC	2 cut(s)	292, 468
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	42, 197, 307
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	173, 237, 251, 284
AluI	AGCT	4 cut(s)	173, 237, 251, 284
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	23, 538
AoxI	GGCC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	183
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	398
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	432
BfmI	CTRYAG	2 cut(s)	411, 525
BglII	AGATCT	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	201, 284
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	3 cut(s)	183, 402, 498
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	432
BsmBI	CGTCTC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	495
Bsp143I	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	182, 401, 499
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	23, 538
BspT107I	GGYRCC	1 cut(s)	137
BssMI	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	83, 231, 235
BstDEI	CTNAG	3 cut(s)	169, 388, 507
BstF5I	GGATG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	7 cut(s)	31, 91, 121, 134, 148, 207, 533
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 243, 281
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	2 cut(s)	411, 525
BstX2I	RGATCY	2 cut(s)	131, 530
BstYI	RGATCY	2 cut(s)	131, 530
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	293
Cac8I	GCNNGC	3 cut(s)	83, 231, 235
CfoI	GCGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	291, 467
CviAII	CATG	2 cut(s)	20, 92
CviJI	RGCY	6 cut(s)	173, 237, 246, 251, 284, 495
CviKI_1	RGCY	6 cut(s)	173, 237, 246, 251, 284, 495
CviQI	GTAC	2 cut(s)	291, 467
DdeI	CTNAG	3 cut(s)	169, 388, 507
DpnI	GATC	7 cut(s)	30, 90, 120, 133, 147, 206, 532
DpnII	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
EaeI	YGGCCR	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	2 cut(s)	23, 95
FaiI	YATR	9 cut(s)	21, 37, 93, 125, 242, 299, 321, 339, 527
FatI	CATG	2 cut(s)	19, 91
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	23, 95
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	2 cut(s)	235, 249
HinfI	GANTC	5 cut(s)	161, 307, 343, 483, 509
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	72, 508
Hpy188III	TCNNGA	5 cut(s)	208, 267, 304, 347, 360
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	8 cut(s)	14, 116, 129, 214, 229, 275, 371, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 243, 281
HpyF3I	CTNAG	3 cut(s)	169, 388, 507
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	23, 95
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
LweI	GCATC	2 cut(s)	201, 284
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	7 cut(s)	30, 90, 120, 133, 147, 206, 532
MboI	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
MflI	RGATCY	2 cut(s)	131, 530
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	3 cut(s)	192, 366, 447
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	4 cut(s)	356, 397, 436, 497
Mox20I	TGGCCA	1 cut(s)	495
Mph1103I	ATGCAT	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	3 cut(s)	20, 243, 281
NdeII	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
NlaIII	CATG	2 cut(s)	23, 95
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	161, 307, 343, 483
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	131, 530
RsaI	GTAC	2 cut(s)	292, 468
RsaNI	GTAC	2 cut(s)	291, 467
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	7 cut(s)	28, 88, 118, 131, 145, 204, 530
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	6 cut(s)	175, 202, 239, 253, 286, 409
SfaNI	GCATC	2 cut(s)	201, 284
SfcI	CTRYAG	2 cut(s)	411, 525
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	192, 366, 447
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	159, 207, 489
TasI	AATT	3 cut(s)	192, 366, 447
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	4 cut(s)	161, 307, 343, 483
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
XceI	RCATGY	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.