Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001208.1

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Forward (+)

25646 .. 32475

Gene Structure 6830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001208.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggcgctcaaaagggtccgctctgagctccaagtaaaagtcaacggctctctctccgctgctgactccgaccaactcttcctcgaccgccaaaaagcactggaggcggccatgaatgatatcaatagctcattcggcaagggaagtgttacaagactaggaagcgctggcggagctttggttgaaactttccccagtggttgcttgacattggaccttgccttaggtggtggcctcccaaaagggagaattgtagagatatttggaccagaaagtagtggaaagacaactctagcactccatgcaatcgcagaggtgcagaggcttggaggaaatgctatgcttgttaatgcagaacatgcctttgatccagcatattcaaaagcattgggagtagatgtagaaaatctgattgtctgccagcctgatcatggtgaaatggcacttgagattgcagatcgtatgtgcagatctggtgccattgatcttatctgtgtcgattctgtctcggctctcactccacgagcagaaattgaaggtgagatcgggatgcaacaaatgggtttgcaagcacgccttatgagccaagctttgcgcaaaatgtcaggaaatgcatctaaagctggatgtactctcatattcttgaatcaaataagatataagattggtgtgtattatgggaatccagaagtgacatctggaggaattgcattaaagttctttgcctcagttcgcctggaaatacgttctacagggaaaataaaatctgtaaaaggagacgaggaaattggggttcgggtccgtgtacgagtgcaaaagagtaaggtttcgaggccatacaaacaagctgaatttgaaattgtgtttggagagggagtaagtcaattgggttgcattttggattgtgctgaaatgatggatgtagtagtgaagaagggctcttggtatagctatggggaccacaggttgggacaaggaagagataaatcattgcagtacttgagagagaaccctgttcttcttgatgagatagagaagatagttcgctccacaatgacagatgcaactggacaggtaggctcattgcacacaaggaacttgccagtaacacatcaggatgaagatgattttgaagatgtccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

381

Amino Acids

41.26

Weight (kDa)

5.96

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	967
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	5 cut(s)	19, 57, 88, 107, 171
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	851
AfaI	GTAC	3 cut(s)	631, 807, 998
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	431, 967
AgsI	TTSAA	6 cut(s)	185, 381, 536, 646, 857, 1133
AjnI	CCWGG	1 cut(s)	735
AjuI	GAANNNNNNNTTGG	2 cut(s)	849, 881
AluBI	AGCT	7 cut(s)	28, 129, 176, 590, 623, 848, 951
AluI	AGCT	7 cut(s)	28, 129, 176, 590, 623, 848, 951
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	511, 771
AlwI	GGATC	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	3 cut(s)	108, 232, 833
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	851
AspLEI	GCGC	3 cut(s)	7, 167, 597
AspS9I	GGNCC	5 cut(s)	16, 214, 266, 799, 958
AsuHPI	GGTGA	2 cut(s)	446, 551
AvaII	GGWCC	5 cut(s)	16, 214, 266, 799, 958
AxyI	CCTNAGG	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	30, 941
BauI	CACGAG	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	910
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	511, 771
BfaI	CTAG	2 cut(s)	158, 293
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	2 cut(s)	8, 168
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	2 cut(s)	60, 108
BlsI	GCNGC	2 cut(s)	61, 109
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	1 cut(s)	737
Bme18I	GGWCC	5 cut(s)	16, 214, 266, 799, 958
BmgT120I	GGNCC	5 cut(s)	16, 214, 266, 799, 958
BmiI	GGNNCC	4 cut(s)	17, 478, 800, 959
BmrFI	CCNGG	1 cut(s)	737
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	540, 623, 1051
BmuI	ACTGGG	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	122, 720
BpuEI	CTTGAG	2 cut(s)	467, 1021
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 384, 414, 861, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 967
Bse1I	ACTGG	4 cut(s)	105, 195, 1072, 1103
Bse21I	CCTNAGG	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	989, 1082
BseBI	CCWGG	1 cut(s)	737
BseGI	GGATG	4 cut(s)	555, 632, 925, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	431, 967
BseMI	GCAATG	2 cut(s)	989, 1082
BseMII	CTCAG	2 cut(s)	15, 741
BseNI	ACTGG	4 cut(s)	105, 195, 1072, 1103
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	2 cut(s)	338, 487
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	110, 234, 835
BshNI	GGYRCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	971, 984
BslI	CCNNNNNNNGG	2 cut(s)	431, 967
BsmAI	GTCTC	2 cut(s)	511, 771
BsmBI	CGTCTC	1 cut(s)	771
BsmFI	GGGAC	2 cut(s)	971, 984
BsnI	GGCC	3 cut(s)	110, 234, 835
Bsp1286I	GDGCHC	2 cut(s)	30, 941
Bsp143I	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
BspACI	CCGC	5 cut(s)	19, 57, 88, 107, 171
BspANI	GGCC	3 cut(s)	110, 234, 835
BspCNI	CTCAG	2 cut(s)	16, 740
BspLI	GGNNCC	4 cut(s)	17, 478, 800, 959
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	989, 1082
BsrI	ACTGG	4 cut(s)	105, 195, 1072, 1103
BssMI	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
BssSI	CACGAG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	737
Bst6I	CTCTTC	2 cut(s)	83, 973
BstAPI	GCANNNNNTGC	2 cut(s)	302, 359
BstC8I	GCNNGC	4 cut(s)	169, 422, 570, 574
BstDEI	CTNAG	3 cut(s)	24, 223, 727
BstF5I	GGATG	4 cut(s)	555, 632, 925, 1123
BstH2I	RGCGCY	2 cut(s)	8, 168
BstHHI	GCGC	3 cut(s)	7, 167, 597
BstKTI	GATC	6 cut(s)	370, 430, 460, 473, 487, 546
BstMAI	GTCTC	2 cut(s)	511, 771
BstMBI	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 135, 173, 302, 359, 582, 620
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	735
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu36I	CCTNAGG	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	110, 234, 835
BtsCI	GGATG	4 cut(s)	555, 632, 925, 1123
BtsIMutI	CAGTG	2 cut(s)	98, 202
Cac8I	GCNNGC	4 cut(s)	169, 422, 570, 574
CfoI	GCGC	3 cut(s)	7, 167, 597
Cfr13I	GGNCC	5 cut(s)	16, 214, 266, 799, 958
Csp6I	GTAC	3 cut(s)	630, 806, 997
CviAII	CATG	4 cut(s)	112, 302, 359, 431
CviQI	GTAC	3 cut(s)	630, 806, 997
DdeI	CTNAG	3 cut(s)	24, 223, 727
DpnI	GATC	6 cut(s)	369, 429, 459, 472, 486, 545
DpnII	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	83, 973
EarI	CTCTTC	2 cut(s)	83, 973
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	30, 941
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	5 cut(s)	16, 214, 266, 799, 958
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	30, 941
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	4 cut(s)	115, 305, 362, 434
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	2 cut(s)	971, 984
FatI	CATG	4 cut(s)	111, 301, 358, 430
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	60, 108
FokI	GGATG	4 cut(s)	562, 639, 932, 1130
FriOI	GRGCYC	2 cut(s)	30, 941
Fsp4HI	GCNGC	2 cut(s)	60, 108
FspBI	CTAG	2 cut(s)	158, 293
FspI	TGCGCA	1 cut(s)	596
GlaI	GCGC	3 cut(s)	6, 166, 596
GluI	GCNGC	2 cut(s)	60, 108
GsuI	CTGGAG	2 cut(s)	122, 720
HaeII	RGCGCY	2 cut(s)	8, 168
HaeIII	GGCC	3 cut(s)	110, 234, 835
HhaI	GCGC	3 cut(s)	7, 167, 597
Hin1II	CATG	4 cut(s)	115, 305, 362, 434
Hin6I	GCGC	3 cut(s)	5, 165, 595
HinP1I	GCGC	3 cut(s)	5, 165, 595
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	4 cut(s)	65, 500, 646, 682
HphI	GGTGA	2 cut(s)	446, 551
Hpy166II	GTNNAC	2 cut(s)	43, 806
Hpy188I	TCNGA	3 cut(s)	25, 70, 411
Hpy188III	TCNNGA	7 cut(s)	547, 606, 643, 686, 699, 1022, 1115
Hpy8I	GTNNAC	2 cut(s)	43, 806
HpyAV	CCTTC	2 cut(s)	530, 928
HpyCH4IV	ACGT	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 135, 173, 302, 359, 582, 620
HpyF3I	CTNAG	3 cut(s)	24, 223, 727
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	4 cut(s)	115, 305, 362, 434
HspAI	GCGC	3 cut(s)	5, 165, 595
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
LmnI	GCTCC	3 cut(s)	33, 173, 1052
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	540, 623, 1051
MaeI	CTAG	2 cut(s)	158, 293
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	3 cut(s)	148, 691, 1105
MalI	GATC	6 cut(s)	369, 429, 459, 472, 486, 545
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
MboII	GAAGA	7 cut(s)	70, 943, 990, 1010, 1048, 1133, 1145
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	30, 941
MluCI	AATT	7 cut(s)	249, 531, 705, 786, 851, 858, 884
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	2 cut(s)	348, 713
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	737
MunI	CAATTG	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	7 cut(s)	104, 135, 173, 302, 359, 582, 620
NdeII	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
NlaIII	CATG	4 cut(s)	115, 305, 362, 434
NlaIV	GGNNCC	4 cut(s)	17, 478, 800, 959
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	691
NsbI	TGCGCA	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	616
NspI	RCATGY	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	500, 646, 682
PflMI	CCANNNNNTGG	1 cut(s)	967
PkrI	GCNGC	2 cut(s)	61, 109
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	4 cut(s)	17, 478, 800, 959
PspPI	GGNCC	5 cut(s)	16, 214, 266, 799, 958
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	3 cut(s)	631, 807, 998
RsaNI	GTAC	3 cut(s)	630, 806, 997
RseI	CAYNNNNRTG	1 cut(s)	1116
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	348, 713
SatI	GCNGC	2 cut(s)	60, 108
Sau3AI	GATC	6 cut(s)	367, 427, 457, 470, 484, 543
Sau96I	GGNCC	5 cut(s)	16, 214, 266, 799, 958
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	2 cut(s)	30, 941
SfaNI	GCATC	3 cut(s)	540, 623, 1051
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	5 cut(s)	16, 214, 266, 799, 958
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	446, 1000
SmoI	CTYRAG	2 cut(s)	446, 1000
Sse9I	AATT	7 cut(s)	249, 531, 705, 786, 851, 858, 884
SsiI	CCGC	5 cut(s)	19, 57, 88, 107, 171
SspMI	CTAG	2 cut(s)	158, 293
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	735
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	3 cut(s)	84, 498, 830
TasI	AATT	7 cut(s)	249, 531, 705, 786, 851, 858, 884
TatI	WGTACW	2 cut(s)	629, 996
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	500, 646, 682
Tru1I	TTAA	2 cut(s)	348, 713
Tru9I	TTAA	2 cut(s)	348, 713
TscAI	CASTG	2 cut(s)	105, 202
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	128, 1134
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	2 cut(s)	105, 202
Van91I	CCANNNNNTGG	1 cut(s)	967
VpaK11BI	GGWCC	5 cut(s)	16, 214, 266, 799, 958
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	2 cut(s)	158, 293
ZrmI	AGTACT	1 cut(s)	998
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.