Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Forward (+)

54121260 .. 54131591

Gene Structure 10332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGGAAAGTGAATCAGACAACATGTTTACTAAACTTACGTTGTATAAGGTGGTTAAAATTCTGAAGTTTTTATCTAGAAATGGCAAAATTTGGAGAAGTCTCCAAAATGACATTCATTCTCCCCCCAAAATGAGCAAATTTGGCTTCAATGAAATGCCTAACCTCAGCGCCAAAACTGAAATTTTGATTAGGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCCAAATATCTGGTGCCATTGATCTTATCTGTGTCGACTCTGTCTCGGCTCTCACTCCACTAGCAGAAATTGAAGGTGAGATCGGGATGCAACAAATGGGTTTAAATTCATCTAAAGCTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATATGGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTCGACTGGAAATACGTTCTACAGGGAAAATAAAATCTGAAATTGGGGTTCGGGTTCGTGTACGAGTGCAAAAGAGTAAGTCATCTAGGAGACAATGCTCTCAGGCGGAATTCAACTCAACTTTTCAGCTCAAAGATGGTTCTGGTGCACTTGTAAGTAAATACACTTTGTTTAATTCATTCAATAGCTGCACTCAACTAATGGAAAGTGTTTTATATAAGATGCCATTGATTATACACTTGATGTCATCAAGCATAAGTAACGTCCGTGAGGCACCTAGTCCCTACACAAACTTTCAGCACCGTTTTCGTGGTAGAAGTGGAGGGCCGTGCGATGGGTTACTGAGCTTTCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAGTTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

307

Amino Acids

34.43

Weight (kDa)

9.46

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	65 - 206	1.4e-41	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	317, 802
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	6 cut(s)	60, 90, 140, 183, 409, 638
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	430, 591
AfiI	CCNNNNNNNGG	2 cut(s)	302, 863
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	6 cut(s)	151, 252, 377, 445, 643, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	422, 658, 717, 876
AluI	AGCT	4 cut(s)	422, 658, 717, 876
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	107, 352, 613
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	304, 854
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	717
ApoI	RAATTY	6 cut(s)	60, 90, 140, 183, 409, 638
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	854
AsuHPI	GGTGA	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	317, 802
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	2 cut(s)	659, 857
BceAI	ACGGC	1 cut(s)	841
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	107, 352, 613
BfaI	CTAG	4 cut(s)	78, 365, 615, 807
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	1 cut(s)	718
BlsI	GCNGC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	854
BmiI	GGNNCC	2 cut(s)	319, 804
BmsI	GCATC	3 cut(s)	211, 381, 741
Bpu10I	CCTNAGC	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 863
Bse1I	ACTGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	396, 431
BseLI	CCNNNNNNNGG	2 cut(s)	302, 863
BseMII	CTCAG	4 cut(s)	181, 540, 644, 863
BseNI	ACTGG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	306, 856
BshNI	GGYRCC	2 cut(s)	317, 802
BsiHKAI	GWGCWC	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	2 cut(s)	302, 863
BsmAI	GTCTC	3 cut(s)	107, 352, 613
BsmFI	GGGAC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	306, 856
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	4 cut(s)	238, 298, 325, 384
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	2 cut(s)	306, 856
BspCNI	CTCAG	4 cut(s)	180, 539, 643, 864
BspLI	GGNNCC	2 cut(s)	319, 804
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	2 cut(s)	317, 802
BsrI	ACTGG	1 cut(s)	540
BssMI	GATC	4 cut(s)	238, 298, 325, 384
Bst4CI	ACNGT	1 cut(s)	833
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	167, 526, 630, 872
BstF5I	GGATG	2 cut(s)	396, 431
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	241, 301, 328, 387
BstMAI	GTCTC	3 cut(s)	107, 352, 613
BstMBI	GATC	4 cut(s)	238, 298, 325, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 230
BstNSI	RCATGY	2 cut(s)	28, 233
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	704
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	306, 856
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	396, 431
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	854
Csp6I	GTAC	2 cut(s)	429, 590
CviAII	CATG	3 cut(s)	25, 230, 302
CviQI	GTAC	2 cut(s)	429, 590
DdeI	CTNAG	4 cut(s)	167, 526, 630, 872
DpnI	GATC	4 cut(s)	240, 300, 327, 386
DpnII	GATC	4 cut(s)	238, 298, 325, 384
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	638
FaeI	CATG	3 cut(s)	28, 233, 305
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	3 cut(s)	24, 229, 301
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	718
FokI	GGATG	2 cut(s)	403, 438
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	4 cut(s)	78, 365, 615, 807
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	718
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	306, 856
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	28, 233, 305
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	4 cut(s)	14, 341, 445, 481
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	4 cut(s)	30, 340, 590, 677
Hpy188I	TCNGA	5 cut(s)	19, 66, 282, 568, 920
Hpy188III	TCNNGA	4 cut(s)	78, 388, 442, 485
Hpy8I	GTNNAC	4 cut(s)	30, 340, 590, 677
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4IV	ACGT	3 cut(s)	41, 544, 792
HpyCH4V	TGCA	6 cut(s)	224, 394, 509, 598, 677, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 230
HpyF3I	CTNAG	4 cut(s)	167, 526, 630, 872
HpySE526I	ACGT	3 cut(s)	41, 544, 792
Hsp92II	CATG	3 cut(s)	28, 233, 305
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	238, 298, 325, 384
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	3 cut(s)	211, 381, 741
MaeI	CTAG	4 cut(s)	78, 365, 615, 807
MaeII	ACGT	3 cut(s)	41, 544, 792
MaeIII	GTNAC	3 cut(s)	490, 788, 867
MalI	GATC	4 cut(s)	240, 300, 327, 386
MboI	GATC	4 cut(s)	238, 298, 325, 384
MhlI	GDGCHC	1 cut(s)	679
MlsI	TGGCCA	1 cut(s)	306
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	6 cut(s)	176, 194, 494, 535, 793, 845
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	4 cut(s)	57, 407, 512, 702
Msp20I	TGGCCA	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	144, 230
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	4 cut(s)	238, 298, 325, 384
NlaIII	CATG	3 cut(s)	28, 233, 305
NlaIV	GGNNCC	2 cut(s)	319, 804
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	2 cut(s)	28, 233
PciI	ACATGT	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	14, 445, 481
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	719
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PscI	ACATGT	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	319, 804
PspPI	GGNCC	1 cut(s)	854
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	430, 591
RsaNI	GTAC	2 cut(s)	429, 590
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	57, 407, 512, 702
SatI	GCNGC	1 cut(s)	718
Sau3AI	GATC	4 cut(s)	238, 298, 325, 384
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	3 cut(s)	211, 381, 741
SfcI	CTRYAG	1 cut(s)	549
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	4 cut(s)	78, 365, 615, 807
TaaI	ACNGT	1 cut(s)	833
TaiI	ACGT	3 cut(s)	44, 547, 795
TaqI	TCGA	2 cut(s)	339, 532
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	14, 445, 481
Tru1I	TTAA	4 cut(s)	57, 407, 512, 702
Tru9I	TTAA	4 cut(s)	57, 407, 512, 702
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	717
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	6 cut(s)	17, 107, 168, 402, 696, 869
TspGWI	ACGGA	1 cut(s)	785
Tth111I	GACNNNGTC	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	675
XapI	RAATTY	6 cut(s)	60, 90, 140, 183, 409, 638
XbaI	TCTAGA	1 cut(s)	77
XceI	RCATGY	2 cut(s)	28, 233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	4 cut(s)	78, 365, 615, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.