Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

1093126 .. 1102931

Gene Structure 9806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G015400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTTTAGTGTTCAGAAGCAACAGCGGAAGCATGAGATACTTTTCGACCCACTCAAACTCACACTCTCACTCGCAGTGCTTACCTTCTCCTCTGTTATTCCAGTCTTCTCTCCTACTGCGCTTCAACGTACACTCAATGGCGGTGAAGCCCATCAAAAGAGTTCGCTGTGAGCTCCAAGCCAAAGTCAATGGTGCTCTTTCTGCTGACTCCGACCCCCGCTTCATTGACCGACAAAAAGCACTGGAAGCAGCAATGAATGATATAAATAGTTCATTTGGAAAGGGTAGCGTTACAAGATTAGGAAGTGCTGGTGGAGCTTTGGTTGAAACTTTTCCCAGTGGCTGCTTGACATTAGACCTTGCCTTAGGTGGTGGCCTTCCAAAAGGGAGAATTGTAGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACTCTAGCACTCCATGCAATTGCAGAGGTGCAGAAGCTTGGAGGAAATGCAATGCTTGTTGATGCAGAACATGCTTTTGATCCAGCATATTCAAAAGCACTGGGGGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCACGGCGAAATGGCACTTGAGATTGCAGATCGTATGTGCAGATCTGGTGCCATCGATCTTATCTGTGTTGATTCTGTCTCGGCTCTCACTCCACGAGCAGAGATTGAAGGTGAGATTGGTATGCAGCAAATGGGTTTGCAAGCACGCCTTATGAGCCAAGCTTTGCGCAAAATGTCAGGAAATGCGTCTAAAGCTGGATGTACTCTAATATTTTTAAATCAAATAAGATATAAGATTGGTGTATACTATGGTAATCCAGAAGTGACATCTGGAGGAATTGCATTAAAATTTTTTGCCTCAGTTCGGCTTGAAATACGTTCTACAGGGAAGATAAAGTCTGTAAAGGGAGATGAAGAAATTGGGGTTCGAGTTCGTGTAAGAGTGCAAAAGAGCAAGGTATCAAGGCCATACAAACAAGCTGAATTTGAAATTGTTTTTGGAGAGGGAGTTGGTAAATTGGGTTGCATTTTGGATTGTGCTGAAACAATGGATGTAGTAGTGAAGAAGGGCTCTTGGTATAGCTATGGGGACCACAGGTTAGGACAAGGAAGAGATAAAGCATTGCAGTACTTGAGAGAGAACCCTCTTCTTCTTGATGAAATAGAGAAGATAGTTCGCTCCATGATCACAGATGGAACTGGACAAGTAGGCACACTGCACACGAGTAACTTGCAAATTCCCCAACAGGATGAAGATGATTTTGAGGATATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

430

Amino Acids

46.57

Weight (kDa)

7.1

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	3 cut(s)	27, 143, 220
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	3 cut(s)	860, 995, 1248
AfaI	GTAC	3 cut(s)	132, 775, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	575, 876
AgsI	TTSAA	6 cut(s)	127, 329, 525, 680, 884, 1001
AjuI	GAANNNNNNNTTGG	4 cut(s)	672, 704, 993, 1025
AluBI	AGCT	7 cut(s)	175, 320, 469, 734, 767, 992, 1095
AluI	AGCT	7 cut(s)	175, 320, 469, 734, 767, 992, 1095
Alw21I	GWGCWC	2 cut(s)	177, 199
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	345
AoxI	GGCC	2 cut(s)	376, 977
ApeKI	GCWGC	3 cut(s)	251, 345, 697
ApoI	RAATTY	3 cut(s)	860, 995, 1248
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	123, 741
AspS9I	GGNCC	2 cut(s)	410, 1102
AsuHPI	GGTGA	2 cut(s)	157, 695
AvaII	GGWCC	2 cut(s)	410, 1102
AxyI	CCTNAGG	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	177, 1085
BauI	CACGAG	2 cut(s)	666, 1234
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	177, 199
BbvI	GCAGC	3 cut(s)	263, 332, 709
BccI	CCATC	3 cut(s)	161, 632, 1199
BceAI	ACGGC	1 cut(s)	592
BcgI	CGANNNNNNTGC	2 cut(s)	1225, 1259
BclI	TGATCA	2 cut(s)	571, 1197
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	894
BglII	AGATCT	1 cut(s)	614
BisI	GCNGC	3 cut(s)	252, 346, 698
BlsI	GCNGC	3 cut(s)	253, 347, 699
BmcAI	AGTACT	1 cut(s)	1142
Bme18I	GGWCC	2 cut(s)	410, 1102
BmgT120I	GGNCC	2 cut(s)	410, 1102
BmiI	GGNNCC	2 cut(s)	622, 1103
BmrI	ACTGGG	2 cut(s)	333, 542
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	2 cut(s)	333, 542
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	2 cut(s)	611, 1165
Bsa29I	ATCGAT	1 cut(s)	627
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 1005, 1035
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 876
Bse1I	ACTGG	5 cut(s)	103, 249, 339, 537, 1216
Bse21I	CCTNAGG	1 cut(s)	367
Bse3DI	GCAATG	3 cut(s)	261, 489, 1133
BseCI	ATCGAT	1 cut(s)	627
BseGI	GGATG	3 cut(s)	776, 1069, 1267
BseLI	CCNNNNNNNGG	2 cut(s)	575, 876
BseMI	GCAATG	3 cut(s)	261, 489, 1133
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	5 cut(s)	103, 249, 339, 537, 1216
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	263, 332, 709
BsgI	GTGCAG	3 cut(s)	482, 631, 1214
BshFI	GGCC	2 cut(s)	378, 979
BshNI	GGYRCC	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	177, 199
BslFI	GGGAC	1 cut(s)	1115
BslI	CCNNNNNNNGG	2 cut(s)	575, 876
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	1115
BsnI	GGCC	2 cut(s)	378, 979
Bsp1286I	GDGCHC	3 cut(s)	177, 199, 1085
Bsp143I	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
BspACI	CCGC	3 cut(s)	27, 143, 220
BspANI	GGCC	2 cut(s)	378, 979
BspCNI	CTCAG	1 cut(s)	884
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	622, 1103
BspPI	GGATC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	3 cut(s)	261, 489, 1133
BsrI	ACTGG	5 cut(s)	103, 249, 339, 537, 1216
BssMI	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
BssNAI	GTATAC	1 cut(s)	817
BssSI	CACGAG	2 cut(s)	666, 1234
Bst1107I	GTATAC	1 cut(s)	817
Bst2BI	CACGAG	2 cut(s)	666, 1234
Bst6I	CTCTTC	2 cut(s)	1117, 1164
BstAPI	GCANNNNNTGC	2 cut(s)	446, 503
BstC8I	GCNNGC	3 cut(s)	566, 714, 718
BstDEI	CTNAG	2 cut(s)	367, 871
BstF5I	GGATG	3 cut(s)	776, 1069, 1267
BstHHI	GCGC	2 cut(s)	123, 741
BstKTI	GATC	6 cut(s)	514, 574, 604, 617, 631, 1200
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 248, 317, 446, 503, 726, 764
BstNSI	RCATGY	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	3 cut(s)	263, 332, 709
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BstZ17I	GTATAC	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	378, 979
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	776, 1069, 1267
BtsI	GCAGTG	2 cut(s)	83, 1226
BtsIMutI	CAGTG	5 cut(s)	83, 242, 346, 530, 1226
Cac8I	GCNNGC	3 cut(s)	566, 714, 718
CaiI	CAGNNNCTG	1 cut(s)	345
CfoI	GCGC	2 cut(s)	123, 741
Cfr13I	GGNCC	2 cut(s)	410, 1102
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	3 cut(s)	131, 774, 1141
CviAII	CATG	4 cut(s)	34, 446, 503, 1195
CviQI	GTAC	3 cut(s)	131, 774, 1141
DdeI	CTNAG	2 cut(s)	367, 871
DpnI	GATC	6 cut(s)	513, 573, 603, 616, 630, 1199
DpnII	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
DraI	TTTAAA	1 cut(s)	789
Eam1104I	CTCTTC	2 cut(s)	1117, 1164
EarI	CTCTTC	2 cut(s)	1117, 1164
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	177, 1085
Eco32I	GATATC	1 cut(s)	1282
Eco47I	GGWCC	2 cut(s)	410, 1102
Eco53kI	GAGCTC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	1282
EcoT38I	GRGCYC	2 cut(s)	177, 1085
FaeI	CATG	4 cut(s)	37, 449, 506, 1198
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	1115
FatI	CATG	4 cut(s)	33, 445, 502, 1194
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	2 cut(s)	571, 1197
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	252, 346, 698
FokI	GGATG	3 cut(s)	783, 1076, 1274
FriOI	GRGCYC	2 cut(s)	177, 1085
Fsp4HI	GCNGC	3 cut(s)	252, 346, 698
FspBI	CTAG	1 cut(s)	437
FspI	TGCGCA	1 cut(s)	740
GlaI	GCGC	2 cut(s)	122, 740
GluI	GCNGC	3 cut(s)	252, 346, 698
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	2 cut(s)	378, 979
HgaI	GACGC	1 cut(s)	747
HhaI	GCGC	2 cut(s)	123, 741
Hin1II	CATG	4 cut(s)	37, 449, 506, 1198
Hin6I	GCGC	2 cut(s)	121, 739
HinP1I	GCGC	2 cut(s)	121, 739
HindIII	AAGCTT	2 cut(s)	467, 732
HinfI	GANTC	2 cut(s)	209, 644
HphI	GGTGA	2 cut(s)	157, 695
Hpy166II	GTNNAC	2 cut(s)	133, 817
Hpy188I	TCNGA	3 cut(s)	17, 214, 555
Hpy188III	TCNNGA	4 cut(s)	750, 830, 843, 1166
Hpy8I	GTNNAC	2 cut(s)	133, 817
HpyAV	CCTTC	4 cut(s)	96, 389, 674, 1072
HpyCH4IV	ACGT	2 cut(s)	129, 889
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 248, 317, 446, 503, 726, 764
HpyF3I	CTNAG	2 cut(s)	367, 871
HpySE526I	ACGT	2 cut(s)	129, 889
Hsp92II	CATG	4 cut(s)	37, 449, 506, 1198
HspAI	GCGC	2 cut(s)	121, 739
Ksp22I	TGATCA	2 cut(s)	571, 1197
Kzo9I	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
LmnI	GCTCC	3 cut(s)	180, 317, 1196
Lsp1109I	GCAGC	3 cut(s)	263, 332, 709
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	129, 889
MaeIII	GTNAC	3 cut(s)	292, 835, 1238
MalI	GATC	6 cut(s)	513, 573, 603, 616, 630, 1199
MboI	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
MboII	GAAGA	9 cut(s)	99, 913, 938, 1087, 1134, 1151, 1154, 1192, 1277
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	3 cut(s)	177, 199, 1085
MluCI	AATT	9 cut(s)	393, 450, 849, 860, 930, 995, 1002, 1028, 1248
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	102, 451, 467, 839, 880, 1009, 1167, 1270
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	788, 857
MspA1I	CMGCKG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	450
MwoI	GCNNNNNNNGC	7 cut(s)	203, 248, 317, 446, 503, 726, 764
NdeII	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
NlaIII	CATG	4 cut(s)	37, 449, 506, 1198
NlaIV	GGNNCC	2 cut(s)	622, 1103
NmeAIII	GCCGAG	1 cut(s)	632
NmuCI	GTSAC	1 cut(s)	835
NsbI	TGCGCA	1 cut(s)	740
NspI	RCATGY	1 cut(s)	506
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	253, 347, 699
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	622, 1103
PspPI	GGNCC	2 cut(s)	410, 1102
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	614
RsaI	GTAC	3 cut(s)	132, 775, 1142
RsaNI	GTAC	3 cut(s)	131, 774, 1141
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	788, 857
SatI	GCNGC	3 cut(s)	252, 346, 698
Sau3AI	GATC	6 cut(s)	511, 571, 601, 614, 628, 1197
Sau96I	GGNCC	2 cut(s)	410, 1102
ScaI	AGTACT	1 cut(s)	1142
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	177, 199, 1085
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	2 cut(s)	410, 1102
SmlI	CTYRAG	2 cut(s)	590, 1144
SmoI	CTYRAG	2 cut(s)	590, 1144
Sse9I	AATT	9 cut(s)	393, 450, 849, 860, 930, 995, 1002, 1028, 1248
SsiI	CCGC	3 cut(s)	27, 143, 220
SspI	AATATT	1 cut(s)	783
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	177
TaiI	ACGT	2 cut(s)	132, 892
TaqI	TCGA	3 cut(s)	47, 627, 940
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	9 cut(s)	393, 450, 849, 860, 930, 995, 1002, 1028, 1248
TatI	WGTACW	2 cut(s)	773, 1140
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	2 cut(s)	788, 857
Tru9I	TTAA	2 cut(s)	788, 857
TscAI	CASTG	5 cut(s)	83, 249, 346, 537, 1233
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	3 cut(s)	251, 345, 697
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	6 cut(s)	214, 264, 272, 939, 1185, 1278
TspRI	CASTG	5 cut(s)	83, 249, 346, 537, 1233
VpaK11BI	GGWCC	2 cut(s)	410, 1102
XapI	RAATTY	3 cut(s)	860, 995, 1248
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.