Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Forward (+)

18437066 .. 18438103

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGAAATGGCACTTGATCGAGACTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATCTAGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCAGGTCCGTGTACGAGTGCAAAAGAGTAAGGTACTTTTAAAAACATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

83

Amino Acids

9.43

Weight (kDa)

10.0

Isoelectric Point (pI)

25.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	6 - 77	4.5e-22	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	34, 210, 231
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	17, 174
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	17, 174
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	17, 174
BsmBI	CGTCTC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	17, 174
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	33, 209, 230
CviQI	GTAC	3 cut(s)	33, 209, 230
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	174
FaiI	YATR	3 cut(s)	41, 63, 81
FokI	GGATG	1 cut(s)	42
FspBI	CTAG	1 cut(s)	102
HinfI	GANTC	2 cut(s)	49, 85
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	4 cut(s)	22, 46, 89, 102
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	113, 217
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	12, 102, 125, 141, 152, 185
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MluCI	AATT	2 cut(s)	108, 189
MnlI	CCTC	3 cut(s)	98, 139, 178
MseI	TTAA	2 cut(s)	116, 236
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	49, 85
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	202
RsaI	GTAC	3 cut(s)	34, 210, 231
RsaNI	GTAC	3 cut(s)	33, 209, 230
SaqAI	TTAA	2 cut(s)	116, 236
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	3 cut(s)	151, 204, 231
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	108, 189
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	138
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	108, 189
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	49, 85
Tru1I	TTAA	2 cut(s)	116, 236
Tru9I	TTAA	2 cut(s)	116, 236
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.