Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Reverse (-)

24622207 .. 24632172

Gene Structure 9966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATTTTTTCAAACAGACCTACATGTTTTCTAAACATGAATCCTTGTCCCAGTAGACCTACATATAAGTTACCTTTCCAACAATATCATTGTTCCCCAATGATGAGTGGCAAAATTTGGAGAAGTCTCCAAAATGACATTCATTCTCCCCCCAAAATGAGCAAATTTGGCTTCAATGGTTTATCATGCTTGCGACCTTCCATCTCTCAATCCCACTTTGGCCTTGAGTTTTCAGCTAAAAAACTTCCACACTTCCCCTCTCTCTCATTTCACTTCCCTCTCTGCGATTCTCTGACTTTTACTGATAATAAGCAGAGGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGTCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGAGATTGCAGACCGTATGTGCAGATCTGGTGCCATTGATCTTATCAGTGTCTATTCTGTCTCGGCTCTCACTCCACGAGCAGAAATTGAAGGTGAGATCGGGATGCAACAAATGGGTTTGCAAGCACGCTTTATGACTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATCTAGAGGAATTGCATTAAAGTTCTTTGCCTTAGTTTGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTTTAAGCACAATAGCCACTTTTTCTTCTCATGCATTAGTAAAAGGAGACAAGGAAATTGGGGTTCGGGTCCGTGTACGAGTGCAAAAGAGTAAGTCATCTAGGAGACAAGGCTCTCAGGCGGAATTCAACTCAACTTTTCAGCTCAAAGATGGTTCTGGTGCACTTGTAAGTAAATACACTTTGTTTAATCCATTCAGCAGCTGCACTCAACTAATGGAAAGTCAACTGATCAGAGAGAGTTATTATACAATTCCAATGTCCTATTCTCATAAATCAACATTTTCATTTCTTCTCCAATTAATCCAAACTTCACCATTAACACCAATTCCACGATTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

354

Amino Acids

39.66

Weight (kDa)

9.32

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	102 - 247	8.4e-50	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	1 cut(s)	842
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	3 cut(s)	114, 164, 845
AfaI	GTAC	2 cut(s)	586, 798
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflIII	ACRYGT	2 cut(s)	23, 352
AgsI	TTSAA	6 cut(s)	12, 175, 375, 530, 601, 850
AjnI	CCWGG	1 cut(s)	690
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 155, 970, 1002
AluBI	AGCT	3 cut(s)	236, 865, 924
AluI	AGCT	3 cut(s)	236, 865, 924
Alw21I	GWGCWC	1 cut(s)	886
Alw26I	GTCTC	4 cut(s)	131, 505, 762, 820
Alw44I	GTGCAC	1 cut(s)	882
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	924
AoxI	GGCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	882
ApeKI	GCWGC	2 cut(s)	921, 924
ApoI	RAATTY	3 cut(s)	114, 164, 845
AseI	ATTAAT	1 cut(s)	1022
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	2 cut(s)	545, 1026
AvaII	GGWCC	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	886
BbvI	GCAGC	2 cut(s)	911, 933
BccI	CCATC	2 cut(s)	209, 866
BciT130I	CCWGG	1 cut(s)	692
BclI	TGATCA	2 cut(s)	421, 951
BcoDI	GTCTC	4 cut(s)	131, 505, 762, 820
BfaI	CTAG	2 cut(s)	654, 822
BfmI	CTRYAG	1 cut(s)	705
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	2 cut(s)	922, 925
BlsI	GCNGC	2 cut(s)	923, 926
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	2 cut(s)	472, 791
BmrFI	CCNGG	1 cut(s)	692
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	334, 534
BmuI	ACTGGG	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	245, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	51, 583
BseBI	CCWGG	1 cut(s)	692
BseGI	GGATG	2 cut(s)	549, 587
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	2 cut(s)	51, 583
BseSI	GKGCMC	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	911, 933
BsgI	GTGCAG	2 cut(s)	481, 910
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	886
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	4 cut(s)	131, 505, 762, 820
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	886
Bsp143I	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
BspACI	CCGC	1 cut(s)	842
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	472, 791
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	51, 583
BssMI	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	191, 416, 564, 568
BstDEI	CTNAG	2 cut(s)	682, 837
BstF5I	GGATG	2 cut(s)	549, 587
BstKTI	GATC	6 cut(s)	364, 424, 467, 481, 540, 954
BstMAI	GTCTC	4 cut(s)	131, 505, 762, 820
BstMBI	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	2 cut(s)	27, 356
BstSCI	CCNGG	1 cut(s)	690
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	911, 933
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	549, 587
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	191, 416, 564, 568
CaiI	CAGNNNCTG	1 cut(s)	924
Cfr13I	GGNCC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	585, 797
CviAII	CATG	6 cut(s)	24, 37, 186, 353, 425, 752
CviQI	GTAC	2 cut(s)	585, 797
DdeI	CTNAG	2 cut(s)	682, 837
DpnI	GATC	6 cut(s)	363, 423, 466, 480, 539, 953
DpnII	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
EciI	GGCGGA	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	690
EcoT22I	ATGCAT	1 cut(s)	757
FaeI	CATG	6 cut(s)	27, 40, 189, 356, 428, 755
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	23, 36, 185, 352, 424, 751
FbaI	TGATCA	2 cut(s)	421, 951
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	922, 925
FokI	GGATG	2 cut(s)	556, 594
Fsp4HI	GCNGC	2 cut(s)	922, 925
FspBI	CTAG	2 cut(s)	654, 822
GluI	GCNGC	2 cut(s)	922, 925
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	27, 40, 189, 356, 428, 755
HincII	GTYRAC	1 cut(s)	947
HindII	GTYRAC	1 cut(s)	947
HinfI	GANTC	4 cut(s)	40, 287, 601, 637
HphI	GGTGA	2 cut(s)	545, 1026
Hpy166II	GTNNAC	4 cut(s)	56, 797, 884, 947
Hpy188I	TCNGA	3 cut(s)	294, 405, 956
Hpy188III	TCNNGA	4 cut(s)	541, 598, 641, 654
Hpy8I	GTNNAC	4 cut(s)	56, 797, 884, 947
HpyAV	CCTTC	2 cut(s)	207, 524
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	682, 837
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	6 cut(s)	27, 40, 189, 356, 428, 755
Ksp22I	TGATCA	2 cut(s)	421, 951
Kzo9I	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
Lsp1109I	GCAGC	2 cut(s)	911, 933
LweI	GCATC	2 cut(s)	334, 534
MaeI	CTAG	2 cut(s)	654, 822
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	2 cut(s)	69, 646
MalI	GATC	6 cut(s)	363, 423, 466, 480, 539, 953
MboI	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
MboII	GAAGA	2 cut(s)	738, 1004
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	886
MluCI	AATT	9 cut(s)	114, 164, 525, 660, 777, 845, 972, 1019, 1047
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	268, 288, 309, 317, 650
Mph1103I	ATGCAT	1 cut(s)	757
MseI	TTAA	5 cut(s)	668, 725, 909, 1022, 1040
MspA1I	CMGCKG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
NlaIII	CATG	6 cut(s)	27, 40, 189, 356, 428, 755
NlaIV	GGNNCC	2 cut(s)	472, 791
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	2 cut(s)	27, 356
PciI	ACATGT	2 cut(s)	23, 352
PfeI	GAWTC	4 cut(s)	40, 287, 601, 637
PkrI	GCNGC	2 cut(s)	923, 926
PscI	ACATGT	2 cut(s)	23, 352
PshBI	ATTAAT	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	2 cut(s)	472, 791
PspPI	GGNCC	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	924
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	924
RsaI	GTAC	2 cut(s)	586, 798
RsaNI	GTAC	2 cut(s)	585, 797
SaqAI	TTAA	5 cut(s)	668, 725, 909, 1022, 1040
SatI	GCNGC	2 cut(s)	922, 925
Sau3AI	GATC	6 cut(s)	361, 421, 464, 478, 537, 951
Sau96I	GGNCC	1 cut(s)	790
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	1 cut(s)	886
SetI	ASST	9 cut(s)	22, 61, 76, 199, 238, 535, 703, 867, 926
SfaNI	GCATC	2 cut(s)	334, 534
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	790
SmlI	CTYRAG	2 cut(s)	224, 440
SmoI	CTYRAG	2 cut(s)	224, 440
Sse9I	AATT	9 cut(s)	114, 164, 525, 660, 777, 845, 972, 1019, 1047
SsiI	CCGC	1 cut(s)	842
SspMI	CTAG	2 cut(s)	654, 822
StyD4I	CCNGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	703
TasI	AATT	9 cut(s)	114, 164, 525, 660, 777, 845, 972, 1019, 1047
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	4 cut(s)	40, 287, 601, 637
Tru1I	TTAA	5 cut(s)	668, 725, 909, 1022, 1040
Tru9I	TTAA	5 cut(s)	668, 725, 909, 1022, 1040
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	2 cut(s)	921, 924
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	3 cut(s)	53, 131, 996
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	882
VpaK11BI	GGWCC	1 cut(s)	790
VspI	ATTAAT	1 cut(s)	1022
XapI	RAATTY	3 cut(s)	114, 164, 845
XbaI	TCTAGA	1 cut(s)	653
XceI	RCATGY	2 cut(s)	27, 356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	2 cut(s)	654, 822
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.