Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003001

Physical Location & Seq

Genomic Coordinates Forward (+)

28136079 .. 28137218

Gene Structure 1140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTAATCATGGCGAAATGGCACTTGAGATTGCAGATCGTATATATGTGATTGCTCATATAAGTCAAATGACTTTCTGGTCTTTTACATTGGGTGAGATCAGGATGCAACAAATGGGTTTGCAAGCACGCTTTATGAGCCAAGCTTTGCGCAAAATGTCGGGAAATGCATCTAAAGCTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCTAGAAGTGACATCTGGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAAGGAGACGAGGAAATTGGGGTTCGGGTCCGTGTACGAGTGCAAAAGAGTAAGGTACTTTTAAAAACATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

162

Amino Acids

18.07

Weight (kDa)

9.45

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	2 - 156	7.6e-48	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79050 AT1G79050
fragaria_vesca	FvH4_1g27813
malus_domestica	MD09G1277400.v1.1 MD17G1270800.v1.1
prunus_persica	Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1 Prupe.3G015400_v2.0.a1
pyrus_communis	pycom09g18680 pycom17g26930
rosa_chinensis	RchiOBHm_Chr1g0376401 RchiOBHm_Chr3g0485071 RchiOBHm_Chr3g0485081 RchiOBHm_Chr3g0488901 RchiOBHm_Chr3g0488941 RchiOBHm_Chr3g0488951 RchiOBHm_Chr6g0270261
rosa_laevigata	RLG00000001730 RLG00000022906
rosa_multiflora	Rmu_sc0001208.1_g000006
rosa_roxburghii	Rroxscaffold_5G00371550 Rroxscaffold_6G00393780
rosa_rugosa	Rorug03G0242300
rosa_samantha	Rh2CG293500 Rh3AG266100 Rh3AG290500 Rh3BG327500 Rh3CG324800 Rh3DG323400 Rh3DG323700 Rh3DG329000 Rh5AG166700
rosa_wichuraiana	Rw1G015550 Rw1G026850 Rw3G025730 Rw5G015170 Rw7G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc16I	TGCGCA	1 cut(s)	233
AclWI	GGATC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	268, 447, 468
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	42, 283
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	227, 260
AluI	AGCT	2 cut(s)	227, 260
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	177, 260
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	192, 269
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	28, 118, 180
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	3 cut(s)	28, 118, 180
Bst2UI	CCWGG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	83, 207, 211
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	192, 269
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	3 cut(s)	31, 121, 183
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	28, 118, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 219, 257
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	192, 269
Cac8I	GCNNGC	3 cut(s)	83, 207, 211
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	267, 446, 467
CviAII	CATG	2 cut(s)	20, 92
CviJI	RGCY	4 cut(s)	85, 222, 227, 260
CviKI_1	RGCY	4 cut(s)	85, 222, 227, 260
CviQI	GTAC	3 cut(s)	267, 446, 467
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	3 cut(s)	30, 120, 182
DpnII	GATC	3 cut(s)	28, 118, 180
DraI	TTTAAA	1 cut(s)	474
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	2 cut(s)	23, 95
FatI	CATG	2 cut(s)	19, 91
FokI	GGATG	2 cut(s)	199, 276
FspBI	CTAG	1 cut(s)	323
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	23, 95
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	283, 319
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	2 cut(s)	72, 484
Hpy188III	TCNNGA	5 cut(s)	184, 243, 280, 323, 336
Hpy8I	GTNNAC	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	7 cut(s)	14, 116, 190, 205, 251, 347, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 219, 257
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	2 cut(s)	23, 95
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	28, 118, 180
LpnPI	CCDG	9 cut(s)	45, 95, 145, 169, 246, 321, 362, 378, 389
LweI	GCATC	2 cut(s)	177, 260
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	30, 120, 182
MboI	GATC	3 cut(s)	28, 118, 180
MluCI	AATT	2 cut(s)	342, 426
MnlI	CCTC	3 cut(s)	332, 373, 415
Mph1103I	ATGCAT	1 cut(s)	253
MseI	TTAA	2 cut(s)	350, 473
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	20, 219, 257
NdeII	GATC	3 cut(s)	28, 118, 180
NlaIII	CATG	2 cut(s)	23, 95
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	328
NsbI	TGCGCA	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	283, 319
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	439
RsaI	GTAC	3 cut(s)	268, 447, 468
RsaNI	GTAC	3 cut(s)	267, 446, 467
SaqAI	TTAA	2 cut(s)	350, 473
Sau3AI	GATC	3 cut(s)	28, 118, 180
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	4 cut(s)	229, 262, 388, 468
SfaNI	GCATC	2 cut(s)	177, 260
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	342, 426
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	388
TasI	AATT	2 cut(s)	342, 426
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	283, 319
Tru1I	TTAA	2 cut(s)	350, 473
Tru9I	TTAA	2 cut(s)	350, 473
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.