Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

30383561 .. 30385499

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATCAGTACTCATCCTCTTTGGTCGATACTTCATTAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGCTCTCGGAGATGCTAACTTTGATGTGTGACAACTACAACGTCTTGAGGAAGCAACTTATGGAATATGTTAACAAGAGCAACATAACCGAGAGGGATCAAATCAGCCCTCCCAAGAAACGCAAATCCCCGGCGAGAGAGGACGCATTCAGCTGCGCGGTTATTGGCGGAGTGTCGGAGAGTAGCTCAACGGATCAAGATGAGTATTTGTGTAAGAAGCAGAGAGAAGAGACTGTCGTGAAGGAGAAAGTCTCAAGGGTCTATTACAAGACCGAAGCTTCTGACACTACCCTCGTTGTGAAAGATGGGTATCAATGGAGGAAATATGGACAGAAAGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGTGAACACAACCATCCAATGCCATCGCAGATCGATTCAAACAATGGCTTAAACCGCCACATCTCTCATGGTGGTTCAGCTTCAACACCCGTTGCAGCAAACAGAAGAAGTAGCTTGACTGTGCCGGTGACTACCGTAGATATGATTGAATCGAAGAAAGTGACGAGCCCAACGTCAAGAATCGATTTTCCCCAAGTTCAGAAACTTTTGGTGGAGCAAATGGCTTCTTCCTTAACCAAAGATCCTAACTTTACAGCAGCTTTAGCAGCAGCTGTTACCGGAAAATTGTATCAACAGAATCATACCGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

302

Amino Acids

33.7

Weight (kDa)

8.59

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	146 - 204	1.3e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	293
AciI	CCGC	3 cut(s)	293, 303, 649
AclWI	GGATC	6 cut(s)	12, 74, 240, 336, 573, 830
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	74, 508, 633, 678, 743
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	359, 391, 474
AlwI	GGATC	6 cut(s)	12, 74, 240, 336, 573, 830
AlwNI	CAGNNNCTG	1 cut(s)	866
ApeKI	GCWGC	5 cut(s)	288, 689, 851, 860, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AspLEI	GCGC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	608, 733
BanII	GRGCYC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	5 cut(s)	275, 701, 863, 872, 875
BccI	CCATC	4 cut(s)	434, 496, 615, 625
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	359, 391, 474
BfaI	CTAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	5 cut(s)	289, 690, 852, 861, 864
BlsI	GCNGC	5 cut(s)	290, 691, 853, 862, 865
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	138
BplI	GAGNNNNNCTC	4 cut(s)	305, 337, 371, 403
BpuEI	CTTGAG	2 cut(s)	202, 373
BpuMI	CCSGG	1 cut(s)	266
Bsa29I	ATCGAT	2 cut(s)	627, 777
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	872
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bse118I	RCCGGY	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	444
BseCI	ATCGAT	2 cut(s)	627, 777
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	14, 607
BseJI	GATNNNNATC	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	5 cut(s)	275, 701, 863, 872, 875
Bsh1236I	CGCG	1 cut(s)	293
BshVI	ATCGAT	2 cut(s)	627, 777
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	266, 719, 873
BsmAI	GTCTC	3 cut(s)	359, 391, 474
BsmI	GAATGC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	523, 764
Bsp143I	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
BspACI	CCGC	3 cut(s)	293, 303, 649
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	2 cut(s)	627, 777
BspFNI	CGCG	1 cut(s)	293
BspPI	GGATC	6 cut(s)	12, 74, 240, 336, 573, 830
BsrFI	RCCGGY	1 cut(s)	718
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
Bst4CI	ACNGT	3 cut(s)	370, 715, 730
Bst6I	CTCTTC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	14, 607
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	8 cut(s)	7, 43, 82, 235, 331, 568, 627, 838
BstMAI	GTCTC	3 cut(s)	359, 391, 474
BstMBI	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	648, 857, 860
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	5 cut(s)	275, 701, 863, 872, 875
BstX2I	RGATCY	3 cut(s)	40, 79, 835
BstYI	RGATCY	3 cut(s)	40, 79, 835
Bsu15I	ATCGAT	2 cut(s)	627, 777
BsuTUI	ATCGAT	2 cut(s)	627, 777
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	14, 607
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	718
ClaI	ATCGAT	2 cut(s)	627, 777
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	662
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	8 cut(s)	6, 42, 81, 234, 330, 567, 626, 837
DpnII	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	764
EcoT38I	GRGCYC	1 cut(s)	764
FaeI	CATG	1 cut(s)	665
FaiI	YATR	9 cut(s)	65, 197, 204, 221, 462, 591, 663, 737, 897
FatI	CATG	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	289, 690, 852, 861, 864
FokI	GGATG	1 cut(s)	594
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	5 cut(s)	289, 690, 852, 861, 864
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	5 cut(s)	289, 690, 852, 861, 864
HapII	CCGG	3 cut(s)	266, 719, 873
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	665
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	4 cut(s)	629, 743, 774, 892
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	3 cut(s)	266, 719, 873
HphI	GGTGA	2 cut(s)	608, 733
Hpy166II	GTNNAC	2 cut(s)	208, 599
Hpy188I	TCNGA	5 cut(s)	145, 313, 418, 552, 795
Hpy188III	TCNNGA	4 cut(s)	181, 332, 373, 771
Hpy8I	GTNNAC	2 cut(s)	208, 599
HpyAV	CCTTC	2 cut(s)	370, 538
HpyCH4III	ACNGT	3 cut(s)	370, 715, 730
HpyCH4IV	ACGT	2 cut(s)	177, 767
HpyCH4V	TGCA	2 cut(s)	584, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	648, 857, 860
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	177, 767
Hsp92II	CATG	1 cut(s)	665
HspAI	GCGC	1 cut(s)	291
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
LmnI	GCTCC	2 cut(s)	526, 808
LpnPI	CCDG	3 cut(s)	279, 732, 886
Lsp1109I	GCAGC	5 cut(s)	275, 701, 863, 872, 875
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	177, 767
MaeIII	GTNAC	6 cut(s)	55, 164, 472, 721, 754, 868
MalI	GATC	8 cut(s)	6, 42, 81, 234, 330, 567, 626, 837
MboI	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
MboII	GAAGA	7 cut(s)	86, 89, 116, 374, 711, 760, 813
MflI	RGATCY	3 cut(s)	40, 79, 835
MhlI	GDGCHC	2 cut(s)	523, 764
MluCI	AATT	2 cut(s)	107, 878
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	28, 177, 222, 255, 268, 437, 447, 556, 586
MseI	TTAA	4 cut(s)	110, 207, 644, 827
MspA1I	CMGCKG	2 cut(s)	288, 866
MspI	CCGG	3 cut(s)	266, 719, 873
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	281
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	648, 857, 860
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
NlaIII	CATG	1 cut(s)	665
NmuCI	GTSAC	4 cut(s)	164, 472, 721, 754
PcsI	WCGNNNNNNNCGW	1 cut(s)	764
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	629, 743, 774, 892
PkrI	GCNGC	5 cut(s)	290, 691, 853, 862, 865
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	3 cut(s)	40, 79, 835
PvuII	CAGCTG	2 cut(s)	288, 866
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	4 cut(s)	110, 207, 644, 827
SatI	GCNGC	5 cut(s)	289, 690, 852, 861, 864
Sau3AI	GATC	8 cut(s)	4, 40, 79, 232, 328, 565, 624, 835
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	523, 764
SfaNI	GCATC	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	181, 388
SmoI	CTYRAG	2 cut(s)	181, 388
Sse9I	AATT	2 cut(s)	107, 878
SsiI	CCGC	3 cut(s)	293, 303, 649
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	370, 715, 730
TaiI	ACGT	2 cut(s)	180, 770
TaqI	TCGA	4 cut(s)	27, 627, 746, 777
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	107, 878
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	629, 743, 774, 892
Tru1I	TTAA	4 cut(s)	110, 207, 644, 827
Tru9I	TTAA	4 cut(s)	110, 207, 644, 827
TseFI	GTSAC	4 cut(s)	164, 472, 721, 754
TseI	GCWGC	5 cut(s)	288, 689, 851, 860, 863
Tsp45I	GTSAC	4 cut(s)	164, 472, 721, 754
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	2 cut(s)	341, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.