Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

36156376 .. 36158892

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACTACTCATCAGCTGCTGCGTATGATACTTCTCTGGATCTTAACACCAGGCCTCTCCGGCTTTTCGATGATTCTCCTCCGATCAAGAAAGAGGTGCAGAGCAAGATTTTGTTCGACTTTGGAAGGGAGCTCTCAGCAAAAGAAGAGACTGGAGCTTTGGTAGAGGAATTGCACAGGGTGAGTACCGAAAACAAGAAGCTGACTGAAATGTTGACGGTGATGGGTGAGAGCTACAATGCTTTGAGAAGCCAATTGTTGGAGTACATGAGCAAGAACCCAGAGAAGGAGCTTAGCCCGATATCCAAGAAAAGAAAGTCTGAAAGTAGTAACAACAACAACAACAGTGCTAACAACATCCTTAATGGCAGCAACAATGGAAACTCTGACAGCAGCTCCAGTGATGGAGAATCATGCAAGAAGCCAAGGGAAGAGACCATCAAGGCCAAAATTTATAGGTCTTATGTCAGGACTGAACCATCCGATACAACAAGCTTGGTTGTCAAGGATGGATATCAATGGAGAAAATATGGTCAAAAGGTTACAAGGGACAATCCTTGTCCTAGAGCTTACTTCAAGTGCTCTTTTGCTCCAACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTTGAGGACCAATCAATTCTGGTGGCAACTTATGAAGGTGAACACAACCATCCCAATCCTTCTCAACTTGAAGCATCACCGGGCTCAAACCGCTGCATGACCATAGGATCAGTCCCCTGCTCAGCCTCTCTTGGCACATCCGGACCAACCATCACTCTTGACTTGACAAAATCCAAGTCCAATACTTCTGATACCAAGAGCCCGAAACCAAGAACTGAAACACCAGAAGTTCGAAAGCTTTTGGTGGAACAGATGGCGTCTTCCTTGACCAAAGACCCCAACTTCACAAAAGCACTTGCAGCAGCCATTTCAGGAAGATTTCTTCAGCACGATACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

322

Amino Acids

35.7

Weight (kDa)

8.84

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	169 - 227	1.8e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	767
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	2 cut(s)	48, 742
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	935
AcyI	GRCGYC	1 cut(s)	884
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	187, 266
AfiI	CCNNNNNNNGG	2 cut(s)	259, 286
AgsI	TTSAA	2 cut(s)	577, 698
AjnI	CCWGG	1 cut(s)	50
Alw21I	GWGCWC	2 cut(s)	135, 584
Alw26I	GTCTC	2 cut(s)	143, 428
AlwI	GGATC	2 cut(s)	48, 742
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	767
AoxI	GGCC	2 cut(s)	53, 444
ApeKI	GCWGC	7 cut(s)	17, 20, 369, 393, 720, 926, 929
ApoI	RAATTY	1 cut(s)	450
ArsI	GACNNNNNNTTYG	4 cut(s)	142, 174, 788, 820
AspS9I	GGNCC	2 cut(s)	634, 770
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	5 cut(s)	193, 232, 239, 677, 696
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	634, 770
BanII	GRGCYC	3 cut(s)	135, 713, 830
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	2 cut(s)	135, 584
BbvI	GCAGC	7 cut(s)	4, 7, 381, 405, 707, 938, 941
BccI	CCATC	8 cut(s)	217, 398, 446, 487, 503, 684, 785, 874
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	143, 428
BfaI	CTAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	7 cut(s)	18, 21, 370, 394, 721, 927, 930
BlpI	GCTNAGC	2 cut(s)	293, 748
BlsI	GCNGC	7 cut(s)	19, 22, 371, 395, 722, 928, 931
Bme1390I	CCNGG	2 cut(s)	52, 708
Bme18I	GGWCC	2 cut(s)	634, 770
BmgT120I	GGNCC	2 cut(s)	634, 770
BmrFI	CCNGG	2 cut(s)	52, 708
BmsI	GCATC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	879
BpmI	CTGGAG	2 cut(s)	174, 382
Bpu1102I	GCTNAGC	2 cut(s)	293, 748
Bpu14I	TTCGAA	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	884
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	767
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 286
Bse1I	ACTGG	2 cut(s)	157, 399
Bse8I	GATNNNNATC	1 cut(s)	513
BseAI	TCCGGA	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	5 cut(s)	357, 479, 514, 676, 764
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	259, 286
BseMII	CTCAG	2 cut(s)	150, 762
BseNI	ACTGG	2 cut(s)	157, 399
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	7 cut(s)	4, 7, 381, 405, 707, 938, 941
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	55, 446
BsiHKAI	GWGCWC	2 cut(s)	135, 584
BsiSI	CCGG	3 cut(s)	61, 707, 768
BslFI	GGGAC	2 cut(s)	563, 725
BslI	CCNNNNNNNGG	2 cut(s)	259, 286
BsmAI	GTCTC	2 cut(s)	143, 428
BsmFI	GGGAC	2 cut(s)	563, 725
BsnI	GGCC	2 cut(s)	55, 446
Bso31I	GGTCTC	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	4 cut(s)	135, 584, 713, 830
Bsp13I	TCCGGA	1 cut(s)	767
Bsp143I	GATC	3 cut(s)	40, 84, 734
Bsp1720I	GCTNAGC	2 cut(s)	293, 748
BspACI	CCGC	1 cut(s)	718
BspANI	GGCC	2 cut(s)	55, 446
BspCNI	CTCAG	2 cut(s)	149, 761
BspEI	TCCGGA	1 cut(s)	767
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	48, 742
BspT104I	TTCGAA	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	157, 399
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	40, 84, 734
BssNI	GRCGYC	1 cut(s)	884
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	220, 347
Bst6I	CTCTTC	2 cut(s)	141, 426
BstACI	GRCGYC	1 cut(s)	884
BstBI	TTCGAA	1 cut(s)	859
BstDEI	CTNAG	3 cut(s)	136, 293, 748
BstF5I	GGATG	5 cut(s)	357, 479, 514, 676, 764
BstKTI	GATC	3 cut(s)	43, 87, 737
BstMAI	GTCTC	2 cut(s)	143, 428
BstMBI	GATC	3 cut(s)	40, 84, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 717, 926
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	50, 706
BstV1I	GCAGC	7 cut(s)	4, 7, 381, 405, 707, 938, 941
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	55, 446
BtsCI	GGATG	5 cut(s)	357, 479, 514, 676, 764
BtsIMutI	CAGTG	2 cut(s)	352, 406
BveI	ACCTGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	634, 770
CseI	GACGC	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	186, 265
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	3 cut(s)	268, 414, 724
CviQI	GTAC	2 cut(s)	186, 265
DdeI	CTNAG	3 cut(s)	136, 293, 748
DpnI	GATC	3 cut(s)	42, 86, 736
DpnII	GATC	3 cut(s)	40, 84, 734
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	141, 426
EarI	CTCTTC	2 cut(s)	141, 426
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	3 cut(s)	135, 713, 830
Eco31I	GGTCTC	1 cut(s)	428
Eco32I	GATATC	2 cut(s)	303, 515
Eco47I	GGWCC	2 cut(s)	634, 770
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	2 cut(s)	303, 515
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	3 cut(s)	135, 713, 830
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	271, 417, 727
FaiI	YATR	9 cut(s)	27, 269, 415, 456, 465, 531, 660, 725, 731
FaqI	GGGAC	2 cut(s)	563, 725
FatI	CATG	3 cut(s)	267, 413, 723
Fnu4HI	GCNGC	7 cut(s)	18, 21, 370, 394, 721, 927, 930
FokI	GGATG	5 cut(s)	344, 466, 521, 663, 751
FriOI	GRGCYC	3 cut(s)	135, 713, 830
Fsp4HI	GCNGC	7 cut(s)	18, 21, 370, 394, 721, 927, 930
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	7 cut(s)	18, 21, 370, 394, 721, 927, 930
GsuI	CTGGAG	2 cut(s)	174, 382
HaeIII	GGCC	2 cut(s)	55, 446
HapII	CCGG	3 cut(s)	61, 707, 768
HgaI	GACGC	1 cut(s)	873
Hin1I	GRCGYC	1 cut(s)	884
Hin1II	CATG	3 cut(s)	271, 417, 727
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	2 cut(s)	493, 863
HinfI	GANTC	2 cut(s)	74, 410
HpaII	CCGG	3 cut(s)	61, 707, 768
HphI	GGTGA	5 cut(s)	193, 232, 239, 677, 696
Hpy166II	GTNNAC	2 cut(s)	216, 668
Hpy188I	TCNGA	6 cut(s)	84, 322, 388, 484, 621, 817
Hpy188III	TCNNGA	6 cut(s)	38, 88, 469, 768, 785, 939
Hpy8I	GTNNAC	2 cut(s)	216, 668
HpyAV	CCTTC	5 cut(s)	120, 280, 607, 656, 696
HpyCH4III	ACNGT	2 cut(s)	220, 347
HpyCH4V	TGCA	5 cut(s)	100, 175, 417, 723, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 717, 926
HpyF3I	CTNAG	3 cut(s)	136, 293, 748
Hsp92I	GRCGYC	1 cut(s)	884
Hsp92II	CATG	3 cut(s)	271, 417, 727
Kpn2I	TCCGGA	1 cut(s)	767
Kzo9I	GATC	3 cut(s)	40, 84, 734
LmnI	GCTCC	5 cut(s)	130, 155, 289, 401, 595
Lsp1109I	GCAGC	7 cut(s)	4, 7, 381, 405, 707, 938, 941
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	329, 541
MalI	GATC	3 cut(s)	42, 86, 736
MboI	GATC	3 cut(s)	40, 84, 734
MboII	GAAGA	5 cut(s)	158, 443, 879, 941, 954
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	135, 584, 713, 830
MluCI	AATT	4 cut(s)	170, 254, 450, 642
MmeI	TCCRAC	2 cut(s)	240, 617
MnlI	CCTC	6 cut(s)	66, 88, 90, 160, 625, 763
MroI	TCCGGA	1 cut(s)	767
MseI	TTAA	2 cut(s)	45, 363
MspA1I	CMGCKG	2 cut(s)	17, 720
MspI	CCGG	3 cut(s)	61, 707, 768
MspR9I	CCNGG	2 cut(s)	52, 708
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	61, 717, 926
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	3 cut(s)	40, 84, 734
NlaIII	CATG	3 cut(s)	271, 417, 727
NspV	TTCGAA	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	74, 410
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	19, 22, 371, 395, 722, 928, 931
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	634, 770
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	187, 266
RsaNI	GTAC	2 cut(s)	186, 265
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	45, 363
SatI	GCNGC	7 cut(s)	18, 21, 370, 394, 721, 927, 930
Sau3AI	GATC	3 cut(s)	40, 84, 734
Sau96I	GGNCC	2 cut(s)	634, 770
ScrFI	CCNGG	2 cut(s)	52, 708
SduI	GDGCHC	4 cut(s)	135, 584, 713, 830
SfaNI	GCATC	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	2 cut(s)	634, 770
Sse9I	AATT	4 cut(s)	170, 254, 450, 642
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	718
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	50, 706
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	220, 347
TaqI	TCGA	3 cut(s)	69, 117, 859
TasI	AATT	4 cut(s)	170, 254, 450, 642
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	74, 410
Tru1I	TTAA	2 cut(s)	45, 363
Tru9I	TTAA	2 cut(s)	45, 363
TscAI	CASTG	2 cut(s)	352, 406
TseI	GCWGC	7 cut(s)	17, 20, 369, 393, 720, 926, 929
TspDTI	ATGAA	1 cut(s)	675
TspRI	CASTG	2 cut(s)	352, 406
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	634, 770
XapI	RAATTY	1 cut(s)	450
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.