Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

15382777 .. 15385100

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGGTTCTTCGTTTCTCGACATCTCTCTCGATCTCAACACCAATCCTTTCTCCGCAAAACTTCCGAAGAAGGAGGTCTCAGTTTTGGCTTCTACTCACTTAAAGAGGAAATGGTTGGAGCAAGACGAGAGCGCAAGTGAGTTACGAGAGGAGCTAAACAGAGTTAATTCAGAGAACAAGAAGCTAACAGAGATGTTAGCTAGAGTCTGTGAGAGCTACAACGAACTACATAATCATTTGGAGAAGCTTCAGAGTCGCCAGAGCCCTGAAATCGAGCAGACCGATATACCGATAAAGAAAAGAAAACAAGACCCGGATGAGTTCTTAGGCTTTCCTATTGGACTCAGTAGTGGAAAAACTGAGAACAGCTCCAGCAACGAAGATCATCATCATCATCATCAGCAACATGAGCAGAAAAATCAGCTTCTTTCATGTAAAAGACCAGTCACTGATAGCTTCAACAAAGCAAAAGTTTCGACTGTCTACGTGCCTACTGAAACATCGGACACAAGCTTGACAGTTAAAGATGGATTTCAATGGAGGAAATACGGACAAAAGGTTACAAGAGACAACCCGTCACCTAGAGCTTACTTTAGATGCTCGTTTGCACCGTCTTGTCCAGTAAAAAAGAAGGTACAACGCAGCGCAGAGGATCCATCTTTACTTGTAGCGACATACGAAGGGACGCATAACCACTTGGGTCCAAATGCTTCTGAAGGGGATGCTACAAGCCAGGGTGGGTCAAGCACAGTGACTTTGGATCTGGTTAATGGCTGTCATAGACTAGCGTTGGAGAAAAACGAAAGGGATAATACGATGCAAGAGGTTCTGATTCAACAAATGGCGTCATCGTTAACAAAAGATTCGAAATTTACAGCTGCTCTTGCTGCTGCTATATCTGGGAGGTTAATGGAGCAATCTAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

310

Amino Acids

34.77

Weight (kDa)

6.87

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	176 - 233	3.8e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	3 cut(s)	650, 663, 771
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	2 cut(s)	236, 738
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	463, 539, 839
AhdI	GACNNNNNGTC	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	85, 564
AlwI	GGATC	3 cut(s)	650, 663, 771
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	4 cut(s)	645, 881, 890, 893
ApoI	RAATTY	1 cut(s)	872
AspLEI	GCGC	2 cut(s)	137, 650
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	573
AsuII	TTCGAA	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	657, 868, 877, 880
BccI	CCATC	2 cut(s)	524, 667
BcgI	CGANNNNNNTGC	2 cut(s)	459, 493
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	85, 564
BfaI	CTAG	4 cut(s)	204, 585, 788, 924
BisI	GCNGC	4 cut(s)	646, 882, 891, 894
BlsI	GCNGC	4 cut(s)	647, 883, 892, 895
Bme1390I	CCNGG	2 cut(s)	317, 737
Bme18I	GGWCC	1 cut(s)	704
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	2 cut(s)	657, 705
BmrFI	CCNGG	2 cut(s)	317, 737
BmsI	GCATC	3 cut(s)	590, 715, 810
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	869
BpuMI	CCSGG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	736
Bse1I	ACTGG	2 cut(s)	446, 623
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	2 cut(s)	325, 730
BseJI	GATNNNNATC	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	96, 354, 361
BseNI	ACTGG	2 cut(s)	446, 623
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	657, 868, 877, 880
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	85, 564
BsmFI	GGGAC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	4 cut(s)	34, 385, 655, 763
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	95, 355, 360
BspLI	GGNNCC	2 cut(s)	657, 705
BspPI	GGATC	3 cut(s)	650, 663, 771
BspT104I	TTCGAA	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	446, 623
BssECI	CCNNGG	1 cut(s)	736
BssMI	GATC	4 cut(s)	34, 385, 655, 763
BssNI	GRCGYC	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	5 cut(s)	8, 484, 523, 615, 754
BstACI	GRCGYC	1 cut(s)	848
BstBAI	YACGTR	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	869
BstDEI	CTNAG	4 cut(s)	82, 328, 347, 363
BstF5I	GGATG	2 cut(s)	325, 730
BstHHI	GCGC	2 cut(s)	137, 650
BstKTI	GATC	4 cut(s)	37, 388, 658, 766
BstMAI	GTCTC	2 cut(s)	85, 564
BstMBI	GATC	4 cut(s)	34, 385, 655, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 887, 890
BstNI	CCWGG	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	315, 735
BstV1I	GCAGC	4 cut(s)	657, 868, 877, 880
BstX2I	RGATCY	2 cut(s)	655, 763
BstYI	RGATCY	2 cut(s)	655, 763
BtsCI	GGATG	2 cut(s)	325, 730
BtsIMutI	CAGTG	2 cut(s)	450, 759
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	2 cut(s)	137, 650
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	2 cut(s)	697, 837
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	3 cut(s)	410, 435, 930
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	4 cut(s)	82, 328, 347, 363
DpnI	GATC	4 cut(s)	36, 387, 657, 765
DpnII	GATC	4 cut(s)	34, 385, 655, 763
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1105I	GACNNNNNGTC	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	2 cut(s)	236, 738
EcoRII	CCWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	3 cut(s)	413, 438, 933
FaiI	YATR	9 cut(s)	234, 290, 411, 436, 679, 693, 783, 899, 931
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	3 cut(s)	409, 434, 929
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	646, 882, 891, 894
FokI	GGATG	2 cut(s)	332, 737
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	646, 882, 891, 894
FspBI	CTAG	4 cut(s)	204, 585, 788, 924
GlaI	GCGC	2 cut(s)	136, 649
GluI	GCNGC	4 cut(s)	646, 882, 891, 894
GsuI	CTGGAG	1 cut(s)	358
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	2 cut(s)	697, 837
HhaI	GCGC	2 cut(s)	137, 650
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	3 cut(s)	413, 438, 933
Hin6I	GCGC	2 cut(s)	135, 648
HinP1I	GCGC	2 cut(s)	135, 648
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	2 cut(s)	248, 514
HinfI	GANTC	5 cut(s)	207, 256, 345, 835, 866
HpaI	GTTAAC	1 cut(s)	858
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	573
Hpy166II	GTNNAC	2 cut(s)	487, 858
Hpy188I	TCNGA	6 cut(s)	69, 175, 255, 508, 718, 834
Hpy188III	TCNNGA	3 cut(s)	20, 32, 924
Hpy8I	GTNNAC	2 cut(s)	487, 858
HpyAV	CCTTC	4 cut(s)	67, 628, 677, 713
HpyCH4III	ACNGT	5 cut(s)	8, 484, 523, 615, 754
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	611, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 887, 890
HpyF3I	CTNAG	4 cut(s)	82, 328, 347, 363
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	3 cut(s)	413, 438, 933
HspAI	GCGC	2 cut(s)	135, 648
KspAI	GTTAAC	1 cut(s)	858
Kzo9I	GATC	4 cut(s)	34, 385, 655, 763
LmnI	GCTCC	4 cut(s)	121, 154, 377, 916
Lsp1109I	GCAGC	4 cut(s)	657, 868, 877, 880
LweI	GCATC	3 cut(s)	590, 715, 810
MaeI	CTAG	4 cut(s)	204, 585, 788, 924
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	5 cut(s)	144, 448, 562, 579, 754
MalI	GATC	4 cut(s)	36, 387, 657, 765
MboI	GATC	4 cut(s)	34, 385, 655, 763
MboII	GAAGA	3 cut(s)	3, 82, 395
MflI	RGATCY	2 cut(s)	655, 763
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	169, 872
MlyI	GAGTC	3 cut(s)	216, 265, 339
MmeI	TCCRAC	2 cut(s)	99, 774
MnlI	CCTC	7 cut(s)	70, 102, 145, 537, 646, 820, 900
MseI	TTAA	6 cut(s)	104, 168, 525, 771, 857, 911
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	317, 737
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	3 cut(s)	412, 887, 890
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	4 cut(s)	34, 385, 655, 763
NlaIII	CATG	3 cut(s)	413, 438, 933
NlaIV	GGNNCC	2 cut(s)	657, 705
NmuCI	GTSAC	3 cut(s)	448, 579, 754
NspV	TTCGAA	1 cut(s)	869
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 611
PfeI	GAWTC	2 cut(s)	835, 866
PkrI	GCNGC	4 cut(s)	647, 883, 892, 895
PleI	GAGTC	3 cut(s)	215, 264, 339
PpsI	GAGTC	3 cut(s)	215, 264, 339
Ppu21I	YACGTR	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	657, 705
PspPI	GGNCC	1 cut(s)	704
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	655, 763
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SaqAI	TTAA	6 cut(s)	104, 168, 525, 771, 857, 911
SatI	GCNGC	4 cut(s)	646, 882, 891, 894
Sau3AI	GATC	4 cut(s)	34, 385, 655, 763
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	3 cut(s)	216, 265, 339
ScrFI	CCNGG	2 cut(s)	317, 737
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	3 cut(s)	590, 715, 810
SfuI	TTCGAA	1 cut(s)	869
SinI	GGWCC	1 cut(s)	704
Sse9I	AATT	2 cut(s)	169, 872
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	4 cut(s)	204, 585, 788, 924
StyD4I	CCNGG	2 cut(s)	315, 735
TaaI	ACNGT	5 cut(s)	8, 484, 523, 615, 754
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	5 cut(s)	21, 33, 276, 479, 869
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	169, 872
TfiI	GAWTC	2 cut(s)	835, 866
Tru1I	TTAA	6 cut(s)	104, 168, 525, 771, 857, 911
Tru9I	TTAA	6 cut(s)	104, 168, 525, 771, 857, 911
TscAI	CASTG	2 cut(s)	457, 759
TseFI	GTSAC	3 cut(s)	448, 579, 754
TseI	GCWGC	4 cut(s)	645, 881, 890, 893
Tsp45I	GTSAC	3 cut(s)	448, 579, 754
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	457, 759
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	872
XbaI	TCTAGA	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	4 cut(s)	204, 585, 788, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.