Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Reverse (-)

49988936 .. 49990722

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGACTATTCATCAGCCGCTGCGTATGATACTTCTCTGGATCTTAACACCAGGCCTCTCCGGCTTTTCGATGATTCTCCTCCGAGTGGTGCTTTGGTAGAGGAATTGCACAGGGTGAGTACCGAAAACAAGAAGCTGACCGAAATGTTGACGGTGATGGGTGAGAACTACAATGCTTTGAGAAGCCAGTTGGTGGAGTACATGAGCAAGAACCCAGAGAAGGAGGTCAGCCCGATATCCAAGAAAAGAAAGTCTGAAAGTAGTAACAACAACAACAACAGTGCTAACAACATCCTTAATGGCATCAACAATGGAAACTCTGAGAGCAGCTCCAGTGATGGAGAATCATGCAAGAAGCCTAGGGAAGAGACCATCAAGGCCAAAATTTATAGGTCTTATGTCAGGACCGAACCATCCGATACAACAAGCTTGGTTGTCAAGGATGGATATCAATGGAGAAAATATGGTCAAAAAGTTACAAGGGACAATCCTTGTCCTAGAGCTTACTTCAAGTGCTCTTTTGCTCCAACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTTGAGGACCAATCAATTCTGGTGGCAACTTATGAAGGTGAACACAACCATCCCAATCCTTCTCAACTTGAAGCATCATCGGGCTCAAACCGCTGCATGACCTTAGGAACAGTCCCCTGCTCAACCTCTCTTGGCACATCCGGACCAACCATCACTCTTGACTTGACAAAATCCAAGTCCAATAATACTTCTGATACCAAGAGCCCGAAACCAAGAACTGAAACACCAGAAGTCCGAAAGCTTTTGGTGGAACAGATGGCGTCTTCCTTGACCAAAGACCCCAACTTCACAAAAGCACTTGCAGCAGCCATTTCAGGAAGATTTCTTCAGCACAATTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

302

Amino Acids

33.28

Weight (kDa)

8.97

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	147 - 205	1.6e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	701
AciI	CCGC	2 cut(s)	18, 652
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	872
AcyI	GRCGYC	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	121, 200
AfiI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
AgsI	TTSAA	2 cut(s)	511, 632
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	136, 330, 429, 503, 802
AluI	AGCT	5 cut(s)	136, 330, 429, 503, 802
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	701
AoxI	GGCC	2 cut(s)	53, 378
ApeKI	GCWGC	5 cut(s)	20, 327, 654, 863, 866
ApoI	RAATTY	1 cut(s)	384
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
AspA2I	CCTAGG	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	405, 568, 704
AsuHPI	GGTGA	4 cut(s)	127, 166, 173, 611
AvaII	GGWCC	3 cut(s)	405, 568, 704
AvrII	CCTAGG	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	647, 767
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	5 cut(s)	7, 339, 641, 875, 878
BccI	CCATC	8 cut(s)	151, 332, 380, 421, 437, 618, 719, 811
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	360, 498
BfuAI	ACCTGC	1 cut(s)	539
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	18, 21, 328, 655, 864, 867
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	6 cut(s)	19, 22, 329, 656, 865, 868
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	3 cut(s)	405, 568, 704
BmgT120I	GGNCC	3 cut(s)	405, 568, 704
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	312, 644
BpiI	GAAGAC	1 cut(s)	816
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	359
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 193, 220
Bse1I	ACTGG	2 cut(s)	187, 333
Bse21I	CCTNAGG	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	701
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	5 cut(s)	291, 413, 448, 610, 698
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	187, 333
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	5 cut(s)	7, 339, 641, 875, 878
BshFI	GGCC	2 cut(s)	55, 380
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	61, 702
BslFI	GGGAC	2 cut(s)	497, 659
BslI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	497, 659
BsnI	GGCC	2 cut(s)	55, 380
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	518, 647, 767
Bsp13I	TCCGGA	1 cut(s)	701
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	18, 652
BspANI	GGCC	2 cut(s)	55, 380
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	187, 333
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	821
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	154, 281, 673
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	821
BstDEI	CTNAG	2 cut(s)	321, 664
BstF5I	GGATG	5 cut(s)	291, 413, 448, 610, 698
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 651, 863
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	5 cut(s)	7, 339, 641, 875, 878
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	55, 380
BtsCI	GGATG	5 cut(s)	291, 413, 448, 610, 698
BtsIMutI	CAGTG	2 cut(s)	286, 340
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	405, 568, 704
CseI	GACGC	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	120, 199
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	3 cut(s)	202, 348, 658
CviQI	GTAC	2 cut(s)	120, 199
DdeI	CTNAG	2 cut(s)	321, 664
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	647, 767
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	2 cut(s)	237, 449
Eco47I	GGWCC	3 cut(s)	405, 568, 704
Eco57I	CTGAAG	1 cut(s)	872
Eco81I	CCTNAGG	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	2 cut(s)	237, 449
EcoT14I	CCWWGG	1 cut(s)	359
EcoT38I	GRGCYC	2 cut(s)	647, 767
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	205, 351, 661
FaiI	YATR	8 cut(s)	27, 203, 349, 390, 399, 465, 594, 659
FaqI	GGGAC	2 cut(s)	497, 659
FatI	CATG	3 cut(s)	201, 347, 657
Fnu4HI	GCNGC	6 cut(s)	18, 21, 328, 655, 864, 867
FokI	GGATG	5 cut(s)	278, 400, 455, 597, 685
FriOI	GRGCYC	2 cut(s)	647, 767
Fsp4HI	GCNGC	6 cut(s)	18, 21, 328, 655, 864, 867
FspBI	CTAG	2 cut(s)	360, 498
GluI	GCNGC	6 cut(s)	18, 21, 328, 655, 864, 867
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	55, 380
HapII	CCGG	2 cut(s)	61, 702
HgaI	GACGC	1 cut(s)	810
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	205, 351, 661
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	427, 800
HinfI	GANTC	2 cut(s)	74, 344
HpaII	CCGG	2 cut(s)	61, 702
HphI	GGTGA	4 cut(s)	127, 166, 173, 611
Hpy166II	GTNNAC	2 cut(s)	150, 602
Hpy188I	TCNGA	7 cut(s)	84, 256, 322, 418, 555, 754, 797
Hpy188III	TCNNGA	5 cut(s)	38, 403, 702, 719, 876
Hpy8I	GTNNAC	2 cut(s)	150, 602
HpyAV	CCTTC	4 cut(s)	214, 541, 590, 630
HpyCH4III	ACNGT	3 cut(s)	154, 281, 673
HpyCH4V	TGCA	4 cut(s)	109, 351, 657, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 651, 863
HpyF3I	CTNAG	2 cut(s)	321, 664
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	3 cut(s)	205, 351, 661
Kpn2I	TCCGGA	1 cut(s)	701
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	335, 529
Lsp1109I	GCAGC	5 cut(s)	7, 339, 641, 875, 878
LweI	GCATC	2 cut(s)	312, 644
MaeI	CTAG	2 cut(s)	360, 498
MaeIII	GTNAC	2 cut(s)	263, 475
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	377, 816, 878, 891
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	518, 647, 767
MluCI	AATT	4 cut(s)	104, 384, 576, 895
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	6 cut(s)	66, 90, 94, 217, 559, 697
MroI	TCCGGA	1 cut(s)	701
MseI	TTAA	2 cut(s)	45, 297
MspA1I	CMGCKG	2 cut(s)	20, 654
MspI	CCGG	2 cut(s)	61, 702
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	61, 651, 863
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	205, 351, 661
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	74, 344
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	19, 22, 329, 656, 865, 868
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspPI	GGNCC	3 cut(s)	405, 568, 704
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	121, 200
RsaNI	GTAC	2 cut(s)	120, 199
SaqAI	TTAA	2 cut(s)	45, 297
SatI	GCNGC	6 cut(s)	18, 21, 328, 655, 864, 867
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	3 cut(s)	405, 568, 704
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	3 cut(s)	518, 647, 767
SfaNI	GCATC	2 cut(s)	312, 644
SinI	GGWCC	3 cut(s)	405, 568, 704
Sse9I	AATT	4 cut(s)	104, 384, 576, 895
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	18, 652
SspMI	CTAG	2 cut(s)	360, 498
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	154, 281, 673
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	2 cut(s)	155, 422
TasI	AATT	4 cut(s)	104, 384, 576, 895
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	74, 344
Tru1I	TTAA	2 cut(s)	45, 297
Tru9I	TTAA	2 cut(s)	45, 297
TscAI	CASTG	2 cut(s)	286, 340
TseI	GCWGC	5 cut(s)	20, 327, 654, 863, 866
TspDTI	ATGAA	1 cut(s)	609
TspRI	CASTG	2 cut(s)	286, 340
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	405, 568, 704
XapI	RAATTY	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	359
XspI	CTAG	2 cut(s)	360, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.