Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

13950785 .. 13952578

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGACTACTCAGCTGCATATGATGATACTTCTTTGGATCTTAATTCCATGCCTCTCAGACTTTTCAATGACACTCCGATGATCGAAAAAGAGGTGCATAGCAAAATATTGATCGACTTTGGGAGGCAGCTTTCACCTAAAGAAGAGAGCGGTGCCCTATTGGAAGAATTGCACCGAGTGAGTGCAGAGAACAAGAAGCTAACAGAAATGTTGACGGTGATGGGAGAGAACTACAATGCTTTGAGAAACCAACTGTTGGAGTACATGAGCAAGAACCCTGAGAAGGAGCTTAGCCCAATTTCAAAGAAAAGAAAGTCCGAAAGCAGCAACAACAACGCAAACAGTAATAATATCATGAATGGAGCAGTGAATAGAAACTCGGAGAGCAGTTCCAGTGATGGAGAGTCCTACAAGAAACCAAGAGAAGAGATCGTCAAGGCTAAGATTTCAAGGGCTTGTGTCCAGACAGAAGCATCTGATACAAGCTTGGTTGTGAAAGATGGATATCAATGGAGGAAATATGGCCAAAAAGTTACTAGGGATAATCCTTGTCCTAGAGCTTACTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGTTGAGGACCAATCTATTTTGGTGGCAACTTATGAAGGTGAACACAACCACCCCAACCCTTCCCAAATTGAAGCAACATCGGGCTCAAACCACTGCGTGGCAATAGGATCCGTCCCTTGCTCAACCTCCCTTGGCTCAACTGGACCTACAATTACTCTTGACTTGACCAAATCCAAGTCCAGTACTGCAGATGCCAAGAGCACAAAAACAAGAACTGAAACACCCGAAGTTCGCAAATTTTTGGTGCAGCAGATGGCTTCTTCCTTGACAAAGGATCCCGATTTCACGAAAGCACTTGCAGCAGCCATATCAGGAAGAATACTTCAACATAATATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

320

Amino Acids

35.31

Weight (kDa)

8.58

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 224	1.5e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	2 cut(s)	256, 715
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	5 cut(s)	45, 720, 733, 887, 900
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	854
AdeI	CACNNNGTG	2 cut(s)	178, 715
AfaI	GTAC	2 cut(s)	263, 802
AfiI	CCNNNNNNNGG	3 cut(s)	256, 283, 715
AgsI	TTSAA	7 cut(s)	67, 303, 450, 568, 611, 689, 944
AluBI	AGCT	7 cut(s)	14, 130, 199, 289, 486, 560, 588
AluI	AGCT	7 cut(s)	14, 130, 199, 289, 486, 560, 588
Alw21I	GWGCWC	1 cut(s)	821
AlwI	GGATC	5 cut(s)	45, 720, 733, 887, 900
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	7 cut(s)	14, 127, 324, 588, 865, 917, 920
ApoI	RAATTY	1 cut(s)	854
AspS9I	GGNCC	2 cut(s)	625, 761
AsuHPI	GGTGA	3 cut(s)	126, 229, 668
AvaII	GGWCC	2 cut(s)	625, 761
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	525
BamHI	GGATCC	2 cut(s)	725, 892
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	6 cut(s)	139, 336, 575, 877, 929, 932
BccI	CCATC	4 cut(s)	214, 392, 494, 865
BfaI	CTAG	2 cut(s)	537, 555
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	7 cut(s)	15, 128, 325, 589, 866, 918, 921
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	7 cut(s)	16, 129, 326, 590, 867, 919, 922
BmcAI	AGTACT	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	625, 761
BmgT120I	GGNCC	2 cut(s)	625, 761
BmiI	GGNNCC	3 cut(s)	154, 727, 894
BmsI	GCATC	2 cut(s)	482, 799
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 283, 715
Bse1I	ACTGG	3 cut(s)	393, 763, 798
Bse8I	GATNNNNATC	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	256, 283, 715
BseMII	CTCAG	3 cut(s)	24, 70, 270
BseNI	ACTGG	3 cut(s)	393, 763, 798
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	6 cut(s)	139, 336, 575, 877, 929, 932
BsgI	GTGCAG	2 cut(s)	204, 884
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	821
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	3 cut(s)	256, 283, 715
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	525
Bsp1286I	GDGCHC	3 cut(s)	157, 704, 821
Bsp143I	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	3 cut(s)	23, 69, 271
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	154, 727, 894
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	5 cut(s)	45, 720, 733, 887, 900
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	393, 763, 798
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
BssT1I	CCWWGG	1 cut(s)	748
Bst4CI	ACNGT	3 cut(s)	217, 255, 344
Bst6I	CTCTTC	2 cut(s)	138, 420
BstDEI	CTNAG	5 cut(s)	10, 56, 279, 290, 441
BstKTI	GATC	6 cut(s)	40, 84, 114, 432, 728, 895
BstMBI	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	6 cut(s)	139, 336, 575, 877, 929, 932
BstX2I	RGATCY	3 cut(s)	37, 725, 892
BstYI	RGATCY	3 cut(s)	37, 725, 892
BsuRI	GGCC	1 cut(s)	525
BtsI	GCAGTG	2 cut(s)	372, 709
BtsIMutI	CAGTG	3 cut(s)	372, 400, 709
CciI	TCATGA	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	625, 761
Csp6I	GTAC	2 cut(s)	262, 801
CviAII	CATG	3 cut(s)	49, 265, 355
CviQI	GTAC	2 cut(s)	262, 801
DdeI	CTNAG	5 cut(s)	10, 56, 279, 290, 441
DpnI	GATC	6 cut(s)	39, 83, 113, 431, 727, 894
DpnII	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
DraIII	CACNNNGTG	2 cut(s)	178, 715
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	138, 420
EarI	CTCTTC	2 cut(s)	138, 420
Eco130I	CCWWGG	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	625, 761
EcoRV	GATATC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	52, 268, 358
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	3 cut(s)	48, 264, 354
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	7 cut(s)	15, 128, 325, 589, 866, 918, 921
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	7 cut(s)	15, 128, 325, 589, 866, 918, 921
FspBI	CTAG	2 cut(s)	537, 555
GluI	GCNGC	7 cut(s)	15, 128, 325, 589, 866, 918, 921
HaeIII	GGCC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	52, 268, 358
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	1 cut(s)	404
HphI	GGTGA	3 cut(s)	126, 229, 668
Hpy166II	GTNNAC	2 cut(s)	213, 659
Hpy188I	TCNGA	5 cut(s)	59, 78, 319, 382, 478
Hpy188III	TCNNGA	6 cut(s)	355, 463, 776, 896, 904, 930
Hpy8I	GTNNAC	2 cut(s)	213, 659
HpyAV	CCTTC	4 cut(s)	277, 598, 647, 687
HpyCH4III	ACNGT	3 cut(s)	217, 255, 344
HpyCH4V	TGCA	7 cut(s)	17, 97, 172, 185, 806, 865, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	5 cut(s)	10, 56, 279, 290, 441
Hsp92II	CATG	3 cut(s)	52, 268, 358
Kzo9I	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
LmnI	GCTCC	3 cut(s)	286, 362, 586
LpnPI	CCDG	7 cut(s)	291, 406, 476, 606, 744, 811, 915
Lsp1109I	GCAGC	6 cut(s)	139, 336, 575, 877, 929, 932
LweI	GCATC	2 cut(s)	482, 799
MaeI	CTAG	2 cut(s)	537, 555
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	6 cut(s)	39, 83, 113, 431, 727, 894
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
MboII	GAAGA	5 cut(s)	155, 176, 437, 870, 945
MflI	RGATCY	3 cut(s)	37, 725, 892
MhlI	GDGCHC	3 cut(s)	157, 704, 821
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	6 cut(s)	43, 167, 297, 684, 768, 854
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	63, 85, 117, 507, 616, 754
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	917
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
NlaIII	CATG	3 cut(s)	52, 268, 358
NlaIV	GGNNCC	3 cut(s)	154, 727, 894
PagI	TCATGA	1 cut(s)	354
PflMI	CCANNNNNTGG	2 cut(s)	256, 715
PkrI	GCNGC	7 cut(s)	16, 129, 326, 590, 867, 919, 922
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	154, 727, 894
PspPI	GGNCC	2 cut(s)	625, 761
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	3 cut(s)	37, 725, 892
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	263, 802
RsaNI	GTAC	2 cut(s)	262, 801
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	7 cut(s)	15, 128, 325, 589, 866, 918, 921
Sau3AI	GATC	6 cut(s)	37, 81, 111, 429, 725, 892
Sau96I	GGNCC	2 cut(s)	625, 761
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	3 cut(s)	157, 704, 821
SfaNI	GCATC	2 cut(s)	482, 799
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	2 cut(s)	625, 761
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	6 cut(s)	43, 167, 297, 684, 768, 854
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	2 cut(s)	108, 952
SspMI	CTAG	2 cut(s)	537, 555
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	217, 255, 344
TaqI	TCGA	2 cut(s)	84, 114
TasI	AATT	6 cut(s)	43, 167, 297, 684, 768, 854
TatI	WGTACW	2 cut(s)	261, 800
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	372, 400, 716
TseI	GCWGC	7 cut(s)	14, 127, 324, 588, 865, 917, 920
TspDTI	ATGAA	2 cut(s)	371, 666
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	3 cut(s)	372, 400, 716
Van91I	CCANNNNNTGG	2 cut(s)	256, 715
VpaK11BI	GGWCC	2 cut(s)	625, 761
XapI	RAATTY	1 cut(s)	854
XspI	CTAG	2 cut(s)	537, 555
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.